Author

Johannes Ojanen

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Research Focus:clustering· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Eloi SchmauchiD· 2 shared Hannu J. KokkiiD· 2 shared Jari HaloneniD· 2 shared Jarmo M. GunniD· 2 shared Juha E.K. HartikaineniD· 2 shared Juho M. JalkaneniD· 2 shared Kristiina Harju· 2 shared Kyriaki Galani· 2 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Eloi SchmauchORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

QClus: A droplet-filtering algorithm for enhanced snRNA-seq data quality in challenging samples

Eloi Schmauch, Johannes Ojanen, Kyriaki Galani, Juho M. Jalkanen, Kristiina Harju, Maija Hollmén, Hannu J. Kokki, Jarmo M. Gunn, Jari Halonen, Juha E.K. Hartikainen, Tuomas Kiviniemi, Pasi Tavi, Minna Unelma Kaikkonen, M Kellis, Suvi Linna-Kuosmanen

QClus improves snRNA-seq data quality by filtering droplets in challenging samples, achieving high quality across multiple datasets and metrics.

Nucleic Acids Research · Nov 4, 2024Peer-reviewedGenomics

Cardiovascular disease causes proinflammatory microvascular changes in the human right atrium

Suvi Linna-Kuosmanen, Eloi Schmauch, Kyriaki Galani, Johannes Ojanen, Carles A. Boix, Tiit Örd, Anu Toropainen, Prosanta Singha, Pierre R. Moreau, Kristiina Harju, Adriana Blazeski, Åsa Segerstolpe, Veikko Lahtinen, Lei Hou, Kai Kang, , M Kellis

The paper uses single-nuclei RNA-seq and spatial transcriptomics to analyze gene expression changes in the right atrium of patients with ischemic heart disease, revealing inflammatory microvascular dysfunction and altered tissue composition.

Cell Reports Medicine · May 1, 2024Peer-reviewedMolecular Biology