Author

John Rabalais

Elements Biosciences (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:CRISPR screen· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:imaging· 2 Research Focus:perturbation response prediction· 2 Assay:proteomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Daniel J. HonigfortiD· 2 shared Matthew William Kellinger· 2 shared Semyon KruglyakiD· 2 shared Xiaodong QiiD· 2 shared Andrew Altomare· 1 shared Andrew M. BoddickeriD· 1 shared Ashley Schwartz· 1 shared Ben Song· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersCell Biology

Daniel J. HonigfortORCID

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2 papers

Recent·Most cited

Cytos MPS: an automated multimodal pooled screening platform for protein, morphology and transcriptomics

Tyler Lopez, John Rabalais, Ben Song, Andrew M. Boddicker, Ashley Schwartz, Daniel J. Honigfort, Xiaodong Qi, Junhua Zhao, Matthew William Kellinger, Semyon Kruglyak

Cytos MPS integrates CRISPR guide identity, morphology, transcriptomics, and protein data to reveal multimodal phenotypes from perturbations.

bioRxiv · Oct 10, 2026 · PreprintCell Biology

Direct In-Sample Sequencing of the 3' Transcriptome Expands the Capabilities of Optical Pooled Screens

Daniel J. Honigfort, Pedro Belda‐Ferre, David T. White, Kousik Sundararajan, Mariam Dawood, Jake A. LeVieux, Jacob Moreno, Xiaodong Qi, Kyle S. Metcalfe, Duuluu Naranbat, Andrew Altomare, Connor Thompson, Carlos Ruiz Perez, Bryan R. Lajoie, Hyuk-Jin Kwon, , Michael J. R. Previte

The paper introduces a platform that directly sequences 3'UTRs and guide RNAs in fixed cells alongside protein abundance and morphology, enabling CRISPR screening in lung cancer cells.

bioRxiv · Oct 11, 2025 · PreprintGenomics