Author

David T. White

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 3 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:zebrafish· 3 Research Focus:differential expression· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:CRISPR screen· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1

Frequent Co-Authors

Jeff S. MummiD· 3 shared Meera T. SaxenaiD· 3 shared Anneliese CeiseliD· 2 shared Gianna Graziano· 2 shared Jiang X. QianiD· 2 shared Kevin EmmerichiD· 2 shared Saumya NimmagaddaiD· 2 shared Zeeshaan Chunawala· 2 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersNeuroscience

Jeff S. MummORCID

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Author profile →

4 papers

Recent·Most cited

Direct In-Sample Sequencing of the 3' Transcriptome Expands the Capabilities of Optical Pooled Screens

Daniel J. Honigfort, Pedro Belda‐Ferre, David T. White, Kousik Sundararajan, Mariam Dawood, Jake A. LeVieux, Jacob Moreno, Xiaodong Qi, Kyle S. Metcalfe, Duuluu Naranbat, Andrew Altomare, Connor Thompson, Carlos Ruiz Perez, Bryan R. Lajoie, Hyuk-Jin Kwon, , Michael J. R. Previte

The paper introduces a platform that directly sequences 3'UTRs and guide RNAs in fixed cells alongside protein abundance and morphology, enabling CRISPR screening in lung cancer cells.

bioRxiv · Oct 11, 2025 · PreprintGenomics

Molecular regulation of retinal regeneration is context specific

Kevin Emmerich, John Hageter, Thanh V. Hoang, Pin Lyu, Abigail V. Sharrock, Anneliese Ceisel, James H. Thierer, Zeeshaan Chunawala, Saumya Nimmagadda, Isabella Palazzo, Frazer Matthews, Liyun Zhang, David T. White, Catalina Rodriquez, Gianna Graziano, , Jeff S. Mumm

The paper identifies 18 genes regulating retinal ganglion cell regeneration in zebrafish using a combination of genetic models and single-cell omics.

bioRxiv · Nov 20, 2023 · PreprintNeuroscience

Transcriptomic comparison of two selective retinal cell ablation paradigms in zebrafish reveals shared and cell-specific regenerative responses

Kevin Emmerich, Steven L. Walker, Guohua Wang, David T. White, Anneliese Ceisel, Fang Wang, Yong Teng, Zeeshaan Chunawala, Gianna Graziano, Saumya Nimmagadda, Meera T. Saxena, Jiang X. Qian, Jeff S. Mumm

The paper compares transcriptomic responses in zebrafish following rod photoreceptor or bipolar cell loss, identifying cell-specific and shared regenerative gene programs and immune-related regulators.

PLoS Genetics · Oct 11, 2023Peer-reviewedNeuroscience

Dendrimer-targeted immunosuppression of microglia reactivity super-accelerates photoreceptor regeneration in the zebrafish retina

Kevin B. Emmerich, David T. White, Siva P. Kambhampati, Grace L. Casado, Tian-ming Fu B, Arpan Sahoo, Meera T. Saxena, Eric Betzig, Rangaramanujam M. Kannan, Jeff S. Mumm

This study shows that dendrimer-targeted immunosuppression of microglia accelerates photoreceptor regeneration in zebrafish retinas.

bioRxiv · Aug 5, 2020 · PreprintNeuroscience