Author

M Stöckle

University of Basel

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetic & Genomic Medicine· 2 Immunology· 2

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 3 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Assay:clinical cohort / trial· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1

Frequent Co-Authors

Alexandra CalmyiD· 3 shared Andri RauchiD· 3 shared Enos BernasconiiD· 3 shared Huldrych F. GünthardiD· 3 shared Jacques FellayiD· 3 shared Matthias L. CavassiniiD· 3 shared Michael HuberiD· 3 shared Roger D. KouyosiD· 3 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersImmunology

Alexandra CalmyORCID

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Author profile →

4 papers

Recent·Most cited

Interdependent Dynamics of mRNA Expression and HIV-1 Viral Load: Insights from Transcriptomics and Mendelian Randomization

Sergey Oreshkov, Christian Wandall Thorball, Jenny Maylan, Maude Muriset, Alexandra Calmy, Angela Ciuffi, Luigia Elzi, Johannes Nemeth, Ansar Muhammad, Lukas Baumann, Patrick Schmid, M Stöckle, Daniel Alpern, the Swiss HIV Cohort Study, Jacques Fellay, Federico Andrea Santoni

The paper identifies 792 genes associated with HIV load using transcriptomics and confirms TRABD2A as a viral restriction factor through Mendelian Randomization.

bioRxiv · Nov 13, 2025 · PreprintImmunology

The XbnAb Cohort: 305 people with broadly neutralizing antibody activity to HIV-1

Chloé Pasin, Daniel G. Schmidt, Merle Schanz, Baptiste Elie, Nikolas Friedrich, Irène A. Abela, Katharina Kusejko, Cyrille R. Niklaus, Michèle Sickmann, Jacqueline Weber, Michael Huber, Amapola Manrique, Andri Rauch, Alexandra Calmy, Matthias L. Cavassini, , the Swiss HIV Cohort Study

The paper introduces the XbnAb cohort, a large cohort of 305 people with HIV-1 broadly neutralizing antibody activity, to support HIV vaccine research.

bioRxiv · Sep 13, 2024 · PreprintImmunology

A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits

Sarah Nadeau, Christian Wandall Thorball, Roger D. Kouyos, Huldrych F. Günthard, Jürg Böni, Sabine Yerly, Matthieu Perreau, Thomas Klimkait, Andri Rauch, Hans Hellmuth Hirsch, Matthias L. Cavassini, Pietro Vernazza, Enos Bernasconi, Jacques Fellay, Venelin Mitov, , S Yerly

This paper introduces a phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits, showing improved detection of host genetic variants in simulations and applied to HIV-1 data.

Molecular Biology and Evolution · Aug 1, 2022Peer-reviewedGenetic & Genomic Medicine

The influence of human genetic variation on Epstein-Barr virus sequence diversity

Sina Rüeger, Christian Hammer, Alexis Loetscher, Paul J. McLaren, Dylan Lawless, Olivier Naret, Nina Khanna, Enos Bernasconi, Matthias L. Cavassini, Huldrych F. Günthard, Christian R. Kahlert, Andri Rauch, Daniel Pearce Depledge, Sofia Morfopoulou, Judith Breuer, , Sabine Yerly

The paper investigates how human genetic variation influences Epstein-Barr virus (EBV) sequence diversity by analyzing paired viral and human genomic data from HIV-coinfected individuals.

Scientific Reports · Feb 25, 2021Peer-reviewedGenetic & Genomic Medicine