Author

M. Battegay

University of Basel

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Genetic & Genomic Medicine· 1 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 4 Research Focus:host-pathogen & immune response· 3 Research Focus:differential expression· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

A. Buser· 3 shared A. Egli· 2 shared A. Rauch· 2 shared A. Zeller· 2 shared C. Saalfrank· 2 shared D. Lang· 2 shared E. Bernasconi· 2 shared H. M. Seth-Smith· 2 shared

Activity by Year

2017-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersEvolutionary Biology

A. Buser

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Author profile →

5 papers

Recent·Most cited

Increased CHIP Prevalence Amongst People Living with HIV

Alexander G. Bick, Konstantin Popadin, Christian W. Thorball, Md Mesbah Uddin, Markella V. Zanni, Bing Yu, Matthias Cavassini, Andri Rauch, Philip Tarr, Patrick Schmid, Enos Bernasconi, Huldrych F. Günthard, Peter Libby, Eric Boerwinkle, Paul J. McLaren, , S. Yerly

The paper investigates the prevalence of clonal hematopoiesis of indeterminate potential (CHIP) in people living with HIV and finds a higher prevalence compared to controls.

Scientific Reports · Jan 12, 2022Peer-reviewedGenetic & Genomic Medicine

Characterising the epidemic spread of Influenza A/H3N2 within a city through phylogenetics

N. F. Müller, D. Wüthrich, N. Goldman, N. Sailer, C. Saalfrank, M. Brunner, N. Augustin, H. M. Seth-Smith, Y. Hollenstein, M. Syedbasha, D. Lang, R. A. Neher, O. Dubuis, M. Naegele, A. Buser, , T. Stadler

The paper uses genetic sequence data and patient metadata to analyze local influenza transmission dynamics in Basel, Switzerland, finding that temperature trends correlate with transmission and that elderly and school children drive different transmission networks.

bioRxiv · Apr 27, 2020Evolutionary Biology

Analysis of SARS-CoV-2 Antibodies in COVID-19 Convalescent Blood using a Coronavirus Antigen Microarray

R. R. de Assis, A. Jain, R. Nakajima, A. Jasinskas, J. Felgner, J. M. Obiero, O. O. Adenaiye, S. Tai, F. H. Hong, P. Norris, M. Stone, G. Simmons, A. Bagri, M. Schreiber, A. Buser, , S. Khan

This paper validates a coronavirus antigen microarray to distinguish SARS-CoV-2 convalescent blood from pre-pandemic controls, showing improved discrimination with spike and nucleoprotein antigens.

bioRxiv · Apr 15, 2020Immunology

High-resolution influenza mapping of a city reveals socioeconomic determinants of transmission within and between urban quarters

A. Egli, N. Goldman, N. F. Müller, M. Brunner, D. Wuethrich, S. Tschudin-Sutter, E. Hodcroft, R. Neher, C. Saalfrank, J. Hadfield, T. Bedfors, M. Syedbasha, T. Vogel, N. Augustin, J. Bauer, , R. Schneider-Sliwa

This study maps influenza transmission in a city at high resolution, finding socioeconomic factors like income influence infection patterns and vaccination rates, independent of population density.

bioRxiv · Apr 3, 2020 · PreprintMicrobiology

Dissecting HIV Virulence: Heritability Of Setpoint Viral Load, CD4+ T Cell Decline And Per-Parasite Pathogenicity

F. Bertels, A. Marzel, G. Leventhal, V. Mitov, J. Fellay, H. F. Gunthard, J. Boni, S. Yerly, T. Klimkait, V. Aubert, M. Battegay, A. Rauch, M. Cavassini, A. Calmy, E. Bernasconi, , Swiss HIV Cohort Study

The paper estimates heritability of HIV virulence traits using donor-recipient regression and phylogenetic models, finding moderate heritability for CD4+ T cell decline and per-parasite pathogenicity.

bioRxiv · Sep 8, 2017Evolutionary Biology