Author

M. G. Lewsey

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 9

Signature Assays, Organisms & Methods

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Approach:statistical model· 7 Organism:Arabidopsis· 6 Research Focus:cell type annotation· 6 Research Focus:gene regulatory network inference· 4 Research Focus:differential expression· 3 Assay:proteomics· 3 Assay:scRNA-seq· 3 Research Focus:benchmarking· 2

Frequent Co-Authors

J. Whelan· 6 shared O. Berkowitz· 3 shared C. Yi· 2 shared D. Lozano-Claros· 2 shared E. Custovic· 2 shared E. Hann· 2 shared G. Deng· 2 shared J. P. Saldierna Guzman· 2 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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6 shared papersPlant Biology

J. Whelan

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Author profile →

9 papers

Recent·Most cited

Transcription Factor Dynamics in Cross-Regulation of Plant Hormone Signaling Pathways

L. Yin, M. Zander, S.-s. C. Huang, M. Xie, L. Song, J. P. Saldierna Guzman, E. Hann, B. K. Shanbhag, S. Ng, S. Jain, B. J. Janssen, N. M. Clark, J. Walley, T. Beddoe, Z. Bar-Joseph, , J. R. Ecker

The paper constructs a cross-regulation network of plant hormone signaling pathways by analyzing transcription factor activity and dynamic regulatory models in Arabidopsis seedlings.

bioRxiv · Mar 7, 2023 · PreprintPlant Biology

Spatially Resolved Transcriptomic Analysis of the Germinating Barley Grain

J. Whelan, M. G. Lewsey, M. Peirats Llobet, L. C. Liew, C. Yi, O. Berkowitz, R. Narsai

This study develops a spatial transcriptomics workflow to analyze gene expression during barley grain germination, revealing spatially specific gene expression patterns and their functional roles.

bioRxiv · Jan 24, 2023Plant Biology

Establishment of cell transcriptional identity during seed germination

L. C. Liew, Y. You, M. Oliva, M. Peirats-Llobet, S. Ng, M. Tamiru-Oli, O. G. Berkowitz, U. V. T. Hong, A. Haslem, T. Stuart, M. E. Ritchie, G. Bassel, R. Lister, J. Whelan, Q. Gouil, M. G. Lewsey

This study maps the temporal changes in cell-type specific gene expression during Arabidopsis seed germination, revealing a shared initial transcriptional state followed by distinct regulatory programs.

bioRxiv · Jan 21, 2023 · PreprintPlant Biology

An environmentally responsive transcriptional state modulates cell identities during root development

M. Oliva, T. Stuart, D. Tang, J. Pflueger, D. Poppe, J. S. Jabbari, S. Gigante, J. M. Dragwidge, J. Whelan, M. G. Lewsey, R. Lister

This study identifies an environmentally responsive transcriptional state that influences cell identities during root development in Arabidopsis, revealing a new layer of patterning independent of ontogenetic trajectories.

bioRxiv · Mar 4, 2022 · PreprintPlant Biology

ColorBayes: Improved color correction of high-throughput plant phenotyping images to account for local illumination differences

D. Lozano-Claros, E. Custovic, G. Deng, J. Whelan, M. G. Lewsey

ColorBayes improves color correction in plant phenotyping images by accounting for local illumination differences using Bayesian inference.

bioRxiv · Mar 1, 2022 · PreprintPlant Biology

Single Cell App: An App for Single Cell RNA-sequencing Data Visualization, Comparison and Discovery

M. G. Lewsey, C. Yi, O. Berkowitz, F. Ayora, M. Bernado, J. Whelan

The Single Cell App enables visualization and comparison of scRNA-seq data, revealing study-specific gene expression patterns and cell-type specific responses.

bioRxiv · Oct 9, 2021 · PreprintPlant Biology

Insights into opium poppy (Papaver spp.) genetic diversity from genotyping-by-sequencing analysis

U. V. T. Hong, M. Tamiru-Oli, B. Hurgobin, C. R. Okey, A. R. Abreu, M. G. Lewsey

The paper analyzes genetic diversity in opium poppy using genotyping-by-sequencing and identifies five subpopulations, with alkaloid profiles and morphological traits aligning with genetic groups.

bioRxiv · Sep 28, 2021Plant Biology

Developmental Normalization of Phenomics Data Generated by High Throughput Plant Phenotyping Systems

D. Lozano-Claros, X. Meng, E. Custovic, G. Deng, O. Berkowitz, J. Whelan, M. G. Lewsey

The paper introduces DAPD, a normalization method for plant phenomics data, which reduces variance and improves measurement uniformity compared to sowing-time normalization.

bioRxiv · May 17, 2020Plant Biology

Integrated Multi-omic Framework of the Plant Response to Jasmonic Acid

M. Zander, M. G. Lewsey, N. M. Clarke, L. Yin, A. Bartlett, J. P. Saldierna Guzman, E. Hann, A. Langford, B. Jow, A. Wise, J. R. Nery, H. Chen, Z. Bar-Joseph, J. Walley, R. Solano, J. R. Ecker

The paper develops an integrated multi-omic framework to study the plant response to jasmonic acid, identifying new regulatory components and crosstalk points with other signaling pathways.

bioRxiv · Aug 19, 2019Plant Biology