R. Lister

Evolutionary diversity of cell-type-specific expression and stress response in Brassicaceae roots

This study profiles root cells from five Brassicaceae species under stress treatments, revealing cell-type-specific gene expression divergence and stress response variation across species.

Characterization of DNA methylation reader proteins of Arabidopsis thaliana

The paper identifies and characterizes DNA methylation reader proteins in Arabidopsis thaliana, revealing context-specific binding preferences and functional roles.

Establishment of cell transcriptional identity during seed germination

This study maps the temporal changes in cell-type specific gene expression during Arabidopsis seed germination, revealing a shared initial transcriptional state followed by distinct regulatory programs.

PHYTOMap: Multiplexed single-cell 3D spatial gene expression analysis in plant tissue

PHYTOMap enables low-cost, transgene-free single-cell spatial gene expression analysis in plant tissue, demonstrating its ability to identify cell types in Arabidopsis roots.

Single Nucleus RNA Sequencing of Pre-Malignant Liver Reveals Disease-Associated Hepatocyte State with HCC Prognostic Potential

The paper uses snRNA-seq to identify a disease-associated hepatocyte state in pre-malignant livers that correlates with HCC risk in mice and humans.

Systematic evaluation of chromatin immunoprecipitation sequencing to study histone occupancy in dormancy transitions of grapevine buds

The paper develops and optimizes a ChIP-seq protocol for studying histone occupancy in dormant grapevine buds, demonstrating its effectiveness for woody tissues.

An environmentally responsive transcriptional state modulates cell identities during root development

This study identifies an environmentally responsive transcriptional state that influences cell identities during root development in Arabidopsis, revealing a new layer of patterning independent of ontogenetic trajectories.

Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri

The paper presents the chromosomal-level genome assembly of Ephydatia muelleri and analyzes its genomic architecture and adaptation mechanisms.

Coordination and assembly of protein complexes encoded across mitochondrial and nuclear genomes is assisted by CLPP2 in Arabidopsis thaliana

The paper shows that CLPP2 in Arabidopsis thaliana aids in coordinating and assembling protein complexes encoded by both mitochondrial and nuclear genomes, affecting mitochondrial protein homeostasis.

Genomic adaptations to aquatic and aerial life in mayflies and the origin of wings in insects

This study analyzes the genome and gene expression of mayflies to uncover genomic adaptations related to aquatic and aerial life and the origin of wings in insects.

Regulatory remodeling in the allo-tetraploid frog Xenopus laevis

This study investigates the genomic and epigenomic consequences of whole genome duplication in Xenopus laevis, finding that subgenome degradation and regulatory element innovation are linked to repeats and non-allelic homologous recombination.