Author

M. J. Shrubsole

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Cell Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

A. J. Simmons· 2 shared C. L. Sears· 2 shared J. T. Roland· 2 shared N. O. Markham· 2 shared R. J. Coffey· 2 shared X. Zhu· 2 shared A. A. Fodor· 1 shared A. N. Southard-Smith· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersCancer Biology

A. J. Simmons

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

On the robustness of inference of association with the gut microbiota in stool, swab and mucosal tissue samples

S. Sun, X. Zhu, X. Huang, H. J. Murff, R. M. Ness, D. L. Seidner, A. Sorgen, I. Blakley, C. Yu, Q. Dai, M. A. Azcarate-Peril, M. J. Shrubsole, A. A. Fodor

This study compares the robustness of microbiota association inference using stool, swab, and mucosal tissue samples in a larger cohort, finding that mucosal samples yield less consistent results than stool or swab.

bioRxiv · Feb 4, 2021Microbiology

Human colorectal pre-cancer atlas identifies distinct molecular programs underlying two major subclasses of pre-malignant tumors

B. Chen, E. T. McKinley, A. J. Simmons, M. A. Ramirez, X. Zhu, A. N. Southard-Smith, N. O. Markham, Q. Sheng, J. Drewes, Y. Xu, C. N. Heiser, Y. Zhou, F. Revetta, L. D. Berry, W. Zheng, , K. Lau

The paper creates a single-cell atlas of colorectal pre-cancerous polyps, identifying distinct molecular programs in adenomas and sessile serrated lesions and their associations with CRC subtypes.

bioRxiv · Jan 11, 2021Cancer Biology

Clinically adaptable polymer enables simultaneous spatial analysis of colonic tissues and biofilms

M. C. Macedonia, J. L. Drewes, N. O. Markham, A. J. Simmons, J. T. Roland, P. N. Vega, C. R. Scurrah, R. J. Coffey, M. J. Shrubsole, C. L. Sears, K. S. Lau

This paper introduces a clinically adaptable polymer that preserves spatial compartments of colonic tissues and biofilms for simultaneous analysis.

bioRxiv · Apr 15, 2020Cell Biology