Author

Qiaoyi Lin

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:DNA methylation· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:protein design· 1

Frequent Co-Authors

Brian J. BeliveauiD· 3 shared Conor K. CamplissoniD· 3 shared David M ShechneriD· 2 shared Devin K. SchweppeiD· 2 shared Evan E. KaniaiD· 2 shared Rose FieldsiD· 2 shared William Stafford NobleiD· 2 shared Aidan M. FenixiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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3 shared papersGenomics

Brian J. BeliveauORCID

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Author profile →

3 papers

Recent·Most cited

DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci

Yuzhen Liu, Christopher D. McGann, Conor P. Herlihy, Mary Krebs, Thomas A. Perkins, Rose Fields, Conor K. Camplisson, David Z Nwizugbo, Qiaoyi Lin, Nicolas J. Longhi, Chris Hsu, Shayan C. Avanessian, Ashley F. Tsue, Evan E. Kania, David M Shechner, , Devin K. Schweppe

DNA O-MAP identifies molecular neighborhoods around specific genomic loci using programmable probes and proteomics.

eLife · Apr 7, 2026Peer-reviewedSystems Biology

Nascent transcript O-MAP reveals the molecular architecture of an RBM20-regulated single-locus subnuclear compartment organized around the TTN RNA

Evan E. Kania, Sara Bianchi, Aidan M. Fenix, Daphnée M. Marciniak, Shuai Li, Qiaoyi Lin, Marilu Casini, Borislav Hrisimirov Hristov, Lukasz Truszkowski, Nicholas G. Skiados, Milad Mokhtaridoost, Conor K. Camplisson, Elisabeth Wyart, Silvia Marchianò, Rose Fields, , David M Shechner

The paper uses O-MAP to study a cardiac-specific RNA factory around TTN RNA, revealing its chromatin interactions, RNA composition, and role of RBM20 in gene regulation.

bioRxiv · Nov 5, 2024 · PreprintGenomics

Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes

Robin Aguilar, Conor K. Camplisson, Qiaoyi Lin, Karen H. Miga, William Stafford Noble, Brian J. Beliveau

The paper introduces Tigerfish, a software tool for designing oligonucleotide probes targeting repetitive DNA intervals across genomes, and demonstrates its application on human chromosomes.

Nature Communications · Feb 3, 2024Peer-reviewedGenomics