Author

Nicolas J. Longhi

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:cell-cell communication· 2 Approach:experimental assay· 2 Assay:proteomics· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Brian J. BeliveauiD· 3 shared Conor K. CamplissoniD· 2 shared Conor P. HerlihyiD· 2 shared Devin K. SchweppeiD· 2 shared Mary KrebsiD· 2 shared Ashley F. TsueiD· 1 shared Chris HsuiD· 1 shared Christopher D. McGanniD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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3 shared papersCell Biology

Brian J. BeliveauORCID

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Author profile →

3 papers

Recent·Most cited

A unified photosensitizer platform for in situ DNA, RNA, and protein directed proximity labeling

Elijah Biletch, Conor P. Herlihy, Lidan Li, Mary Krebs, Conor J Kelly, Nicolas J. Longhi, Olivia Weissenfels, Hanna G. Goldberg, Kyle Brandt, Jonathan B. Grimm, Luke D. Lavis, Edward L. Huttlin, Devin K. Schweppe, Keriann M. Backus, Brian J. Beliveau

The paper introduces POCA, a photosensitizer platform for proximity labeling of proteins, RNA, and DNA in fixed cells without genetic engineering, demonstrating its utility across multiple molecular targets.

bioRxiv · May 1, 2026 · PreprintCell Biology

DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci

Yuzhen Liu, Christopher D. McGann, Conor P. Herlihy, Mary Krebs, Thomas A. Perkins, Rose Fields, Conor K. Camplisson, David Z Nwizugbo, Qiaoyi Lin, Nicolas J. Longhi, Chris Hsu, Shayan C. Avanessian, Ashley F. Tsue, Evan E. Kania, David M Shechner, , Devin K. Schweppe

DNA O-MAP identifies molecular neighborhoods around specific genomic loci using programmable probes and proteomics.

eLife · Apr 7, 2026Peer-reviewedSystems Biology

Predicting cell cycle stage from 3D single-cell nuclear-stained images

Gang Li, Eva K. Nichols, Valentino E. Browning, Nicolas J. Longhi, Madison Sanchez-Forman, Conor K. Camplisson, Brian J. Beliveau, William Stafford Noble

CellCycleNet predicts cell cycle phases from 3D nuclear-stained images, outperforming SVM models and showing strong generalization across microscopes.

Life Science Alliance · Apr 3, 2025Peer-reviewedCell Biology