Author

Jinsheng Xu

Huazhong Agricultural UniversityORCID 0000-0002-5083-6354Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:Hi-C· 1

Frequent Co-Authors

Chunhui HouiD· 2 shared Li LiiD· 2 shared Zi WeniD· 2 shared Daniel SchindleriD· 1 shared Jef D. BoekeiD· 1 shared Junbiao DaiiD· 1 shared Junying ZhangiD· 1 shared Kai LiiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersSynthetic Biology

Chunhui HouORCID

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3 papers

Recent·Most cited

COCOA: A Framework for Fine-scale Mapping Cell-type-specific Chromatin Compartmentalization Using Epigenomic Information

Kai Li, Ping Zhang, Jinsheng Xu, Zi Wen, Junying Zhang, Zhike Zi, Li Li

COCOA infers fine-scale chromatin compartment patterns from histone modifications, showing accurate results and cell-type-specific predictions.

Genomics Proteomics & Bioinformatics · Dec 1, 2024Peer-reviewedBioinformatics

Large-scale genomic rearrangements boost SCRaMbLE in Saccharomyces cerevisiae

Tianyi Li, Shijun Zhao, Li Cheng, Sha Hou, Zhouqing Luo, Jinsheng Xu, Wenfei Yu, Shuangying Jiang, Marco Monti, Daniel Schindler, Weimin Zhang, Chunhui Hou, Yingxin Ma, Yizhi Cai, Jef D. Boeke, Junbiao Dai

This study demonstrates that genomic rearrangements in yeast can be efficiently induced using SCRaMbLE, leading to diverse genetic changes and phenotypic effects.

bioRxiv · May 21, 2023 · PreprintSynthetic Biology

Extensive Chromatin Structure-Function Association Revealed by Accurate Compartmentalization Characterization

Zi Wen, Weihan Zhang, Quan Zhong, Jinsheng Xu, Chunhui Hou, Zhaohui Steve Qin, Li Li

The paper introduces MOSAIC, a method to detect chromatin compartments, revealing micro-compartments that improve understanding of chromatin structure-function relationships.

bioRxiv · Sep 17, 2021 · PreprintBioinformatics