Author

S. A. Quinodoz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 3 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:imaging· 2 Approach:microscopy & imaging analysis· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

C. P. Brangwynne· 2 shared M. Guttman· 2 shared A. Bruckner· 1 shared A. Yildirim· 1 shared D. R. Miller· 1 shared D. S. W. Lee· 1 shared E. H. Finn· 1 shared F. Alber· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersBiophysics

C. P. Brangwynne

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Author profile →

4 papers

Recent·Most cited

The genomic and cellular basis of biosynthetic innovation in rove beetles

S. A. Kitchen, T. H. Naragon, A. Bruckner, M. S. Ladinsky, S. A. Quinodoz, J. M. Badroos, J. W. Viliunas, J. M. Wagner, D. R. Miller, M. Yousefelahiyeh, I. A. Antoshechkin, K. T. Eldredge, S. Pirro, M. Guttman, S. R. Davis, , J. Parker

This study investigates the genomic and cellular basis of biosynthetic innovation in rove beetles, identifying key genomic and cellular mechanisms underlying the evolution of defensive secretions.

Cell · Jul 1, 2024Peer-reviewedEvolutionary Biology

Live imaging of Alu elements reveals non-uniform euchromatin dynamics coupled to transcription

Y.-C. Chang, S. A. Quinodoz, C. P. Brangwynne

The paper uses CRISPR to live image Alu elements in euchromatin, revealing non-uniform dynamics linked to transcriptional activity.

bioRxiv · Mar 15, 2024 · PreprintBiophysics

Viscoelastic RNA entanglement and advective flow underlie nucleolar form and function

J. A. Riback, J. M. Eeftens, D. S. W. Lee, S. A. Quinodoz, L. Beckers, L. A. Becker, C. P. Brangwynne

The paper maps nucleolar rRNA dynamics using imaging and modeling, finding that rRNA moves radially due to viscoelastic properties and polymerization, leading to a new model for rRNA release.

bioRxiv · Dec 31, 2021Biophysics

Integrative Genome Modeling Platform reveals essentialityof rare contact events in 3D genome organizations

L. Boninsegna, A. Yildirim, G. Polles, S. A. Quinodoz, E. H. Finn, M. Guttman, X. J. Zhou, F. Alber

The paper develops a multi-modal data integration approach to improve genome structure modeling and shows that rare contact events are essential for predicting nuclear architecture.

bioRxiv · Aug 22, 2021Biophysics