Author

S. R. Bagde

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biochemistry· 2 Cell Biology· 2 Plant Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Research Focus:protein structure prediction· 2 Organism:yeast· 2 Organism:Arabidopsis· 1 Organism:bacteria (other)· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:contrastive learning· 1

Frequent Co-Authors

J. C. Fromme· 4 shared A. H. K. Roeder· 1 shared A. Khosla· 1 shared A. Krishnakumar· 1 shared A. R. Fernie· 1 shared A. Singh· 1 shared A. Skirycz· 1 shared B. A. Brownfield· 1 shared

Activity by Year

2021-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersCell Biology

J. C. Fromme

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

The transcription factor ATML1 maintains giant cell identity by inducing synthesis of its own (very) long-chain fatty acid-containing ligands

B. V. L. Vadde, N. J. Russell, S. R. Bagde, B. Askey, M. M. Saint-Antoine, B. A. Brownfield, S. Mughal, L. E. Apprill, A. Khosla, F. K. Clark, E. M. Schwarz, S. Alseekh, A. R. Fernie, A. Singh, K. Schrick, , A. H. K. Roeder

The paper shows that high ATML1 concentrations induce VLCFA synthesis, which maintains giant cell identity by promoting auto-activation through lipid ligand binding.

bioRxiv · Mar 14, 2024 · PreprintPlant Biology

Activity-based directed evolution of a membrane editor in mammalian cells

R. Tei, S. R. Bagde, J. C. Fromme, J. M. Baskin

This paper develops a membrane editor using engineered phospholipase D variants to modify phospholipid composition in cells and in vitro.

bioRxiv · Sep 26, 2022Cell Biology

Structure of a TRAPPII-Rab11 activation intermediate reveals GTPase substrate selection mechanisms

S. R. Bagde, J. C. Fromme

The paper presents cryoEM structures of the TRAPPII complex from budding yeast, revealing mechanisms of Rab11 specificity and nucleotide exchange.

bioRxiv · Dec 20, 2021Cell Biology

Structures of core eukaryotic protein complexes

I. R. Humphreys, J. Pei, M. Baek, A. Krishnakumar, I. Anishchenko, S. R. Ovchinnikov, J. Zheng, T. Ness, S. Banjade, S. R. Bagde, V. Stancheva, X. Li, K. Liu, Z. Zheng, D. Barerro, , D. Baker

The paper uses coevolution analysis and deep learning to model core eukaryotic protein complexes in yeast, identifying 104 new assemblies and structurally characterizing 608 previously unknown complexes.

bioRxiv · Sep 30, 2021Biochemistry

Filament dynamics driven by ATP hydrolysis modulates membrane binding of the bacterial actin MreB

V. Pande, N. Mitra, S. R. Bagde, R. Srinivasan, P. Gayathri

This study shows that ATP hydrolysis modulates MreB filament dynamics and membrane binding, affecting filament length, bundling, and curvature-dependent orientation.

bioRxiv · Apr 8, 2021Biochemistry