Author

Xiaoman Niu

University of Michigan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Bioinformatics· 1 Developmental Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:cell type annotation· 2 Assay:imaging· 2 Organism:mouse· 2 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:software / tool· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Dawen CaiiD· 4 shared Mou-Chi Cheng· 3 shared Bin DuaniD· 2 shared Hehai Jiang· 2 shared Jung‐Chien HsiehiD· 2 shared Logan A. WalkeriD· 2 shared Meng CuiiD· 2 shared Ye LiiD· 2 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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4 shared papersNeuroscience

Dawen CaiORCID

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Author profile →

4 papers

Recent·Most cited

Simultaneous brain-wide single-cell recording resolves spatiotemporal memory architecture

Dongqing Shi, Yongjie Hou, Yixiao Yan, Tian-hao Zhang, William C. Joesten, Peng Liu, Yixuan Wang, Mehul Gautam, Jormay Lim, Lirong Zheng, Jonathan Gould, BumJin Ko, Xiaoman Niu, Mou-Chi Cheng, Jung‐Chien Hsieh, , Changyang Linghu

The paper introduces GLOBE, a brain-wide single-cell recording technology, and demonstrates its use in capturing Fos transcriptional activity across a mouse brain over time.

bioRxiv · May 22, 2026 · PreprintNeuroscience

Diverse and Location-Specific Roles of PlexinA2, PlexinA4, and NCAM in Developing Hippocampal Mossy Fibers

Xiaofeng Zhao, Rafi Kohen, Eljo Y. van Battum, Xiaoman Niu, Ying Zeng, Xiaolu Zhang, Craig N. Johnson, Karen Wang, Marieke G. Verhagen, Brian C. Lim, Juan A. Osés-Prieto, Joshua M. Rasband, Alma L. Burlingame, Dawen Cai, R. Jeroen Pasterkamp, , Roman J. Giger

This study investigates the roles of PlexinA2, PlexinA4, and NCAM in the development of mossy fibers in the hippocampus, revealing distinct and overlapping functions in axon bundling and targeting.

Translational Psychiatry · Feb 12, 2026Peer-reviewedDevelopmental Biology

A parallelly distributed microscope and software system for scalable high-throughput multispectral 3D imaging

Hehai Jiang, Logan A. Walker, Ye Li, Bin Duan, Xiaoman Niu, Jung‐Chien Hsieh, Peng Yin, Mou-Chi Cheng, Hanquan Su, Kuanwei Sheng, Jessica P. Tang, Kenneth Athukorala, Stacey Greene, Ruby Pan, Arya Parlapalli, , Dawen Cai

The paper introduces a parallelly distributed microscope and software system for high-throughput multispectral 3D imaging with high resolution and data throughput.

bioRxiv · May 31, 2025 · PreprintBioengineering

A browser-based platform for storage, visualization, and analysis of large-scale 3D images in HPC environments

Logan A. Walker, Wei Jie Lee, Bin Duan, Menelik Weatherspoon, Ye Li, Fred Y. Shen, Mou-Chi Cheng, Xiaoman Niu, Jacob Eggerd, Bin Xie, Jimmy Hon Pong Cheng, Humphrey Xu, Xiao-Xiang Zhong, Hehai Jiang, Meng Cui, , Dawen Cai

The paper develops a platform for storing, visualizing, and analyzing large-scale 3D images in HPC environments using a scalable storage format and web-based annotation tools.

bioRxiv · Oct 4, 2024 · PreprintBioinformatics