Author

Yuanbang Mai

Fudan University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Systems Biology· 2 Cell Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:metabolomics· 2 Assay:proteomics· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Leming M. ShiiD· 3 shared Lianhua DongiD· 3 shared Qingwang CheniD· 3 shared Wanwan HouiD· 3 shared Yuanting ZhengiD· 3 shared Huixiao HongiD· 2 shared Jingcheng YangiD· 2 shared Jinming LiiD· 2 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersSystems Biology

Leming M. ShiORCID

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Author profile →

4 papers

Recent·Most cited

A ratio-based framework using Quartet reference materials for integrating long- and short-read RNA-seq

Qingwang Chen, Xiaorou Guo, D Wang, Jiaxin Zhao, Yang J. Xu, Yupei You, Yuanbang Mai, Shumeng Duan, Yaqing Liu, Yutong Zhang, Xiaojing Li, Hu Chen, Wanwan Hou, Ying Kin Yu, Lianhua Dong, , Yuanting Zheng

This paper develops a ratio-based framework using Quartet reference materials to integrate long- and short-read RNA-seq data, showing hybrid-seq achieves the highest quantification accuracy.

bioRxiv · Sep 15, 2025 · PreprintGenomics

Correcting batch effects in large-scale multiomic studies using a reference-material-based ratio method

Ying Yu, Naixin Zhang, Yuanbang Mai, Luyao Ren, Qiaochu Chen, Zehui Cao, Qingwang Chen, Yaqing Liu, Wanwan Hou, Jingcheng Yang, Huixiao Hong, Joshua Xu, Weida Tong, Lianhua Dong, Leming M. Shi, , Yuanting Zheng

The paper evaluates seven batch-effect correction algorithms for multiomic data and finds the ratio-based method is more effective, especially when batch effects are confounded with biological factors.

Genome biology · Sep 6, 2023Peer-reviewedSystems Biology

Ratio-based quantitative multiomics profiling using universal reference materials empowers data integration

Yuanting Zheng, Yaqing Liu, Jingcheng Yang, Lianhua Dong, Rui Zhang, Sha Tian, Ying Yu, Luyao Ren, Wanwan Hou, Feng Zhu, Yuanbang Mai, Jinxiong Han, Lijun Zhang, Hui Jiang, Ling Lin, , Leming M. Shi

This paper introduces ratio-based multiomics profiling using universal reference materials to improve data integration across omics types and batches.

bioRxiv · Oct 24, 2022 · PreprintSystems Biology

Resolution of Reprogramming Transition States by Single Cell RNA-Sequencing

Lin Guo, Xiaoshan Wang, Mingwei Gao, Lihui Lin, Junqi Kuang, Yuanbang Mai, Fang Wu, He Liu, Jiaqi Yang, Shilong Chu, Hong Song, Yujian Liu, Jiadong Liu, Jinyong Wang, Guangjin Pan, , Duanqing Pei

Single cell RNA sequencing identifies two reprogramming branches in mouse fibroblasts, with Dppa5a marking pluripotent cells and IFN-gamma inhibiting the transition.

bioRxiv · Aug 30, 2017 · PreprintCell Biology