Author

Kamran Karimi

University of CalgaryORCID 0000-0001-5733-9409Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Approach:statistical model· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Organism:Drosophila· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1

Frequent Co-Authors

Peter D. VizeiD· 3 shared Troy J. PellsiD· 3 shared Aaron M. ZorniD· 2 shared Christina James‐ZorniD· 2 shared Malcolm E FisheriD· 2 shared A. Jordan WrightiD· 1 shared Adam C GibsoniD· 1 shared Ajay Shrivatsav· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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3 shared papersBioinformatics

Peter D. VizeORCID

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Author profile →

3 papers

Recent·Most cited

Updates to the Alliance of Genome Resources Central Infrastructure

Suzi Aleksander, Anna V. Anagnostopoulos, Giulia Antonazzo, Valerio Arnaboldi, Helen L. Attrill, Andrés Becerra, Susan M Bello, Olin Blodgett, Yvonne M. Bradford, Carol J. Bult, Scott Cain, Brian R. Calvi, Seth Carbon, Juancarlos Chan, Wen J. Chen, , Aaron M. Zorn

The paper updates the Alliance of Genome Resources' central infrastructure, adding tools and enhancing data management and curation capabilities.

bioRxiv · Nov 20, 2023 · PreprintBioinformatics

The Xenopus Phenotype Ontology: bridging model organism phenotype data to human health and development.

Malcolm E Fisher, Erik Segerdell, Nicolas Matentzoglu, Mardi J. Nenni, Joshua D. Fortriede, Stanley Chu, Troy J. Pells, David Osumi-Sutherland, Praneet Chaturvedi, Christina James‐Zorn, Nivitha Sundararaj, Vaneet Lotay, Virgilio G. Ponferrada, Dong Zhuo Wang, Eugene Kim, , Aaron M. Zorn

The paper introduces the Xenopus Phenotype Ontology (XPO) to standardize phenotype data from Xenopus experiments and link them to human health and development.

BMC Bioinformatics · Mar 22, 2022Peer-reviewedBioinformatics

The protein repertoire in early vertebrate embryogenesis

Leonid Peshkin, Alexander Lukyanov, Marian Kalocsay, Robert M. Gage, DongZhuo Wang, Troy J. Pells, Kamran Karimi, Peter D. Vize, Martin Wühr, Marc W. Kirschner

The paper presents a comprehensive characterization of protein dynamics in Xenopus laevis early development and provides a web-based resource for data exploration.

bioRxiv · Mar 11, 2019 · PreprintDevelopmental Biology