Author
Chris Q. Doe
Howard Hughes Medical InstituteORCID 0000-0001-5980-8029Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2017-2026 · peak 5/yrCo-Author Collaboration Network
10 top collaborators · 14 mutual co-author links31 papers
Recent·Most cited
- Developmental BiologyeLifePeer-reviewed2 citations
- NeurosciencebioRxivPreprint
Cell body clustering drives gap junction-mediated synchronous activity in command neurons
Kristen M. Lee, Josmarie Graciani, Natalie Rico Carvajal…·Chris Q. Doe
The paper shows that cell body clustering of Drosophila MDNs enables gap junction-mediated synchronous activity essential for backward walking.
DOI 10.64898/2026.02.26.708359 - Developmental BiologyDevelopmental BiologyPeer-reviewed
Vnd and En are expressed in orthogonal stripes and act in a brief competence window to combinatorially specify NB7-1 and its early lineage
Nathan L.Q. Anderson, Sen-Lin Lai, Chris Q. Doe
The paper identifies Engrailed and Vnd as spatial transcription factors that act combinatorially in a brief competence window to specify the identity of neuroblast 7-1 in Drosophila embryos.
8 citationstop 3% - NeurosciencebioRxivPreprint
Hunchback functions in the post-mitotic larval MDN to restrict axon outgrowth, synapse formation, and backward locomotion
Kristen M. Lee, Natalie Rico Carvajal, Josmarie Graciani, Chris Q. Doe
This study shows that Hunchback (Hb) in Drosophila larval MDN neurons restricts axon outgrowth, synapse formation, and backward locomotion by maintaining mature neuronal identity.
2 citations - Developmental BiologyDevelopmentPeer-reviewed
Castor is a temporal transcription factor that specifies early born central complex neuron identity
The paper identifies Castor as a temporal transcription factor in Drosophila that specifies early-born central complex neuron identities.
7 citations - Developmental BiologybioRxivPreprint
The Hunchback temporal transcription factor determines interneuron molecular identity, morphology, and presynapse targeting in the Drosophila NB5-2 lineage
Heather Q Pollington, Chris Q. Doe
This study shows that prolonged Hunchback expression in Drosophila NB5-2 progenitors alters interneuron molecular identity, morphology, and presynapse targeting, affecting proprioceptive behavior.
DOI 10.1101/2024.10.07.616945 - NeurosciencebioRxivPreprint
Progenitor-Derived Regulatory Logic Generates Functionally Related Neuronal Subtypes
Chundi Xu, Rishi Sastry, Peter Newstein…·Chris Q. Doe
The paper identifies a regulatory logic in progenitors that generates functionally related neuronal subtypes, showing its conservation across species.
DOI 10.1101/2024.09.27.615552 - Developmental BiologyDevelopmentPeer-reviewed
Seven-up acts in neuroblasts to specify adult central complex neuron identity and initiate neuroblast decommissioning
Noah R. Dillon, Laurina Manning, Keiko Hirono, Chris Q. Doe
The paper shows that Seven-up (Svp) specifies adult central complex neuron identity and initiates neuroblast decommissioning in Drosophila.
11 citations - NeurosciencebioRxivPreprint
Transcriptional complexity in the insect central complex: single nuclei RNA sequencing of adult brain neurons derived from type 2 neuroblasts
Derek Epiney, Gonzalo N Morales Chaya, Noah R. Dillon…·Chris Q. Doe
The paper uses single nuclei RNA sequencing to analyze transcriptional diversity of T2 neuroblast-derived neurons and glia in Drosophila, identifying clusters and transcription factor codes for neuron subtypes in the central complex.
16 citations - Developmental BiologyeLifePeer-reviewed
Homeodomain proteins hierarchically specify neuronal diversity and synaptic connectivity
Chundi Xu, Tyler B. Ramos, Edward M. Rogers…·Chris Q. Doe
The paper shows that homeodomain transcription factors (HDTFs) hierarchically specify neuronal diversity and synaptic connectivity in Drosophila lamina neurons.
19 citations - Developmental BiologyeLifePeer-reviewed
Notch signaling and Bsh homeodomain activity are integrated to diversify Drosophila lamina neuron types
Chundi Xu, Tyler B. Ramos, Owen J. Marshall, Chris Q. Doe
The paper shows Notch signaling differentially specifies L4 and L5 Drosophila lamina neuron fates by modulating Bsh's chromatin accessibility and gene activation.
18 citations - Developmental BiologyPLoS ONEPeer-reviewed
Imp is required for timely exit from quiescence in Drosophila type II neuroblasts
Jordan A. Munroe, Mubarak Hussain Syed, Chris Q. Doe
This study shows that Imp promotes exit from quiescence in Drosophila type II neuroblasts, independent of Syncrip, and relates to its role in promoting proliferation.
8 citations - NeuroscienceeLifePeer-reviewed
Presynaptic contact and activity opposingly regulate postsynaptic dendrite outgrowth
Emily L. Heckman, Chris Q. Doe
The paper investigates how presynaptic contact and activity opposingly regulate postsynaptic dendrite outgrowth during neural circuit development in Drosophila.
17 citations - Developmental BiologyDevelopmental BiologyPeer-reviewed
Transcriptional profiling from whole embryos to single neuroblast lineages in Drosophila
Austin Q. Seroka, Sen-Lin Lai, Chris Q. Doe
The paper uses scRNA-seq to analyze Drosophila embryos and neuroblast lineages, identifying gene expression patterns and lineage-specific markers.
26 citations - NeuroscienceCurrent BiologyPeer-reviewed
Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity
Arnaldo Carreira-Rosario, Ryan A. York, Minseung Choi…·Thomas R. Clandinin
The paper shows that mechanosensory input during Drosophila circuit formation regulates patterned spontaneous network activity (PaSNA), which is essential for larval locomotor behavior.
43 citations - NeuroscienceeLifePeer-reviewed
A locomotor neural circuit persists and functions similarly in larvae and adult Drosophila
The paper shows that the MDN-Pair1 neural circuit persists through metamorphosis in Drosophila and maintains similar locomotor function in larvae and adults.
49 citations - NeuroscienceNaturePeer-reviewed
Astrocytes close a critical period of motor circuit plasticity
Sarah D. Ackerman, Nelson A. Perez-Catalan, Marc R. Freeman, Chris Q. Doe
The paper identifies astrocytes as essential for closing the critical period of motor circuit plasticity in Drosophila by regulating dendrite morphology and locomotor behavior through Neuroligin-Neurexin signaling.
114 citationstop 1% - NeurosciencebioRxivPreprint
A developmental framework linking neurogenesis and circuit formation in the Drosophila CNS
Brandon Mark, Sen-Lin Lai, Aref Arzan Zarin…·Chris Q. Doe
The paper maps the developmental origin of interneurons in Drosophila and shows how lineage and temporal identity shape synaptic connectivity and circuit formation.
- NeuroscienceNeural DevelopmentPeer-reviewed
Precise levels of Nectin-3 and an interaction with Afadin are required for proper synapse formation in postnatal visual cortex
Johanna Tomorsky, Philip R. L. Parker, Chris Q. Doe, Cristopher M. Niell
8 citations - NeuroscienceNeuronPeer-reviewed
Synaptic specificity is collectively determined by partner identity, location and activity
Javier Valdés-Alemán, Richard Doty Fetter, Emily C. Sales…·Marta Zlatic
The paper investigates how synaptic connections in Drosophila are formed through partner-derived cues, global positional cues, and synaptic activity, showing that all three contribute to proper circuit assembly.
70 citationstop 4% - Developmental BiologyNeural DevelopmentPeer-reviewed
A novel temporal identity window generates alternating cardinal motor neuron subtypes in a single progenitor lineage
Austin Q. Seroka, Rita M. Yazejian, Sen-Lin Lai, Chris Q. Doe
The paper shows that a temporal identity window in Drosophila neuroblast lineage generates alternating cardinal motor neuron subtypes through the Kr/Pdm pathway.
14 citations - NeuroscienceeLifePeer-reviewed
A Drosophila larval premotor/motor neuron connectome generating two behaviors via distinct spatio-temporal muscle activity
Aref Arzan Zarin, Brandon Mark, Albert Cardona…·Chris Q. Doe
The paper constructs a Drosophila larval connectome linking proprioceptors, premotor neurons, and motor neurons to explain how distinct motor behaviors arise from shared neural circuits.
134 citationstop 2% - NeuroscienceeLifePeer-reviewed
Regulation of subcellular dendritic synapse specificity by axon guidance cues
Emily C. Sales, Emily L. Heckman, Timothy L. Warren, Chris Q. Doe
The paper investigates how axon guidance cues determine subcellular synapse specificity in Drosophila neurons, showing that these cues, not distinct dendritic domains, dictate synaptic connections.
22 citations - NeuroscienceDevelopmentPeer-reviewed
The Hunchback temporal transcription factor determines motor neuron axon and dendrite targeting in Drosophila
Austin Q. Seroka, Chris Q. Doe
This study shows that intrinsic temporal identity, determined by the Hunchback transcription factor, dictates axon and dendrite targeting in Drosophila motor neurons, overriding birth order.
34 citations - Developmental BiologyeLifePeer-reviewed
Temporal identity establishes columnar neuron morphology, connectivity, and function in a Drosophila navigation circuit
Luis F. Sullivan, Timothy L. Warren, Chris Q. Doe
The paper shows that developmental origin shapes connectivity and function in Drosophila navigation circuit neurons, with Eyeless/Pax6 regulating their number and navigation ability.
46 citations - BioinformaticseLifePeer-reviewed
A repressor-decay timer for robust temporal patterning in embryonic Drosophila neuroblast lineages
Inna Averbukh, Sen-Lin Lai, Chris Q. Doe, Naama Barkai
The paper shows that repressor-decay timers are more robust than activator-relay timers in Drosophila neuroblast lineages, supporting a repressor-decay mechanism for temporal patterning.
36 citations - Developmental BiologybioRxivPreprint
Neuroblast-specific chromatin landscapes allow integration of spatial and temporal cues to generate neuronal diversity in Drosophila
Sonia Sen, Sachin Chanchani, Tony D. Southall, Chris Q. Doe
The paper identifies how spatial and temporal cues integrate in Drosophila neuroblasts through chromatin landscapes to generate neuronal diversity.
2 citations - NeuroscienceeLifePeer-reviewed
A command-like descending neuron that coordinately activates backward and inhibits forward locomotion
Arnaldo Carreira-Rosario, Aref Arzan Zarin, Matthew Q. Clark…·Chris Q. Doe
The paper identifies a command-like descending neuron that induces backward locomotion and inhibits forward locomotion in larvae and adults.
114 citations - Developmental BiologyDevelopmentPeer-reviewed
Drosophila embryonic type II neuroblasts: origin, temporal patterning, and contribution to the adult central complex
Kathleen T. Walsh, Chris Q. Doe
This study identifies the origin and developmental contribution of type II neuroblasts in Drosophila embryos, showing they generate neurons that contribute to the adult central complex.
94 citations