Author

Chirag R. Parikh

Johns Hopkins UniversityORCID 0000-0001-9051-7385Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Genetics· 1 Genomics· 1 Immunology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 5 Approach:statistical model· 5 Research Focus:cell type annotation· 4 Assay:spatial transcriptomics· 4 Assay:scRNA-seq· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2

Frequent Co-Authors

Avi Z. RosenbergiD· 4 shared James C. WilliamsiD· 4 shared Krzysztof KirylukiD· 4 shared Amanda L. KnoteniD· 3 shared Joseph P. GautiD· 3 shared Paul M. PalevskyiD· 3 shared Ricardo Melo FerreiraiD· 3 shared Sanjay R. JainiD· 3 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersImmunology

Avi Z. RosenbergORCID

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Author profile →

6 papers

Recent·Most cited

ImmunologyNature CommunicationsPeer-reviewedAug 27, 2026

Spatial analysis reveals the cellular microenvironments and mechanisms of inflammation and kidney injury in acute interstitial nephritis

Megan Leila Baker, Vijayakumar R. Kakade, Tifanny Budiman…·Lloyd G. Cantley

The paper identifies the CXCL9-CXCR3 axis and NAMPT as key drivers of inflammation and kidney injury in acute interstitial nephritis using spatial transcriptomics and imaging.

DOI 10.1038/s41467-026-77210-y

humanspatial transcriptomics

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Molecular BiologybioRxivPreprintSep 26, 2025

Cellular and Spatial Drivers of Unresolved Injury and Functional Decline in the Human Kidney

Blue B. Lake, Ricardo Melo Ferreira, Jens Hansen…·Sanjay R. Jain

The paper presents a multi-modal atlas of human kidney disease, identifying cellular and spatial mechanisms of injury resolution or failure and linking them to clinical outcomes.

13 citations

humanmouse

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Developmental BiologyStem Cell ReportsPeer-reviewedMar 13, 2025

Genetic variation modulates susceptibility to aberrant DNA hypomethylation and imprint deregulation in naive pluripotent stem cells

Chirag R. Parikh, Rachel A. Glenn, Yufang Shi…·Matthias Stadtfeld

The paper identifies genetic variants that influence DNA methylation stability and imprint deregulation in naive pluripotent stem cells across different mouse strains.

4 citations

mouseDNA methylation

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BioinformaticsbioRxivPreprintNov 26, 2024

Integration of spatial multiplexed protein imaging and transcriptomics in the human kidney tracks the regenerative potential timeline of proximal tubules

Mahla Asghari, Angela R. Sabo, Daria Barwinska…·Pierre C. Dagher

1 citation

humanspatial transcriptomics

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GeneticsbioRxivPreprintNov 10, 2023

Single Nucleus RNA Sequencing of Remnant Kidney Biopsies and Urine Cell RNA Sequencing Reveal Cell Specific Markers of Covid-19 Acute Kidney Injury

Reetika R. Ghag, Madhurima Kaushal, Gerald Nwanne…·Sanjay R. Jain

2 citations

humanscRNA-seq

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GenomicsNaturePeer-reviewedJul 19, 2023

An atlas of healthy and injured cell states and niches in the human kidney

Blue B. Lake, Rajasree Menon, Seth Winfree…·Ljiljana Paša‐Tolić

The paper creates a high-resolution cellular atlas of healthy and injured kidney cell states and niches using single-cell and spatial technologies, identifying molecular signatures and pathways related to kidney injury.

768 citationstop 1%

humanscRNA-seq

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