Author
Hyunbum Jang
Frederick National Laboratory for Cancer ResearchORCID 0000-0001-9402-4051Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2021-2026 · peak 4/yrCo-Author Collaboration Network
10 top collaborators · 24 mutual co-author links14 papers
Recent·Most cited
- BiophysicsCommunications ChemistryPeer-reviewed
The structural basis of RanGAP1 regulation and catalysis in nuclear transport
Liang Xu, Hyunbum Jang, Ruth Nussinov
This study reveals the structural basis of RanGAP1 regulation and catalysis in nuclear transport, showing how sumoylation and conformational changes coordinate GTP hydrolysis.
DOI 10.1038/s42004-026-02163-8 - BiophysicsThe Journal of Physical Chemistry BPeer-reviewed
How Functional Variants Reconfigure the Rac2 Conformational Landscape
Nurit Haspel, Hyunbum Jang, Ruth Nussinov
This study investigates how mutations in Rac2 alter its conformational dynamics and signaling, revealing distinct inactive and overactive states that impact cellular function.
1 citation - BiophysicsCommunications ChemistryPeer-reviewed
Oncogenic PI3Kα variants reveal graded conformational spectrum with mutation-specific cryptic pockets
Hyunbum Jang, Bengi Ruken Yavuz, Mingzhen Zhang…·Ruth Nussinov
The paper uses molecular dynamics simulations to show that double mutations in PI3K variants lead to more active conformations and drug-targetable cryptic pockets, suggesting a conformational selection strategy for drug development.
7 citationstop 1% - BioinformaticsbioRxivPreprint
Cellular Mechanisms Underlying Melanoma Brain Metastasis
Bengi Ruken Yavuz, Hyunbum Jang, Ruth Nussinov
The paper identifies key molecular pathways and proteins associated with melanoma brain metastasis through genomic analysis and suggests therapeutic strategies targeting these pathways.
2 citations - Molecular BiologyJournal of Molecular BiologyPeer-reviewed
ERK Allosteric Activation: The Importance of Two Ordered Phosphorylation Events
Clil Regev, Hyunbum Jang, Ruth Nussinov
This study uses molecular dynamics simulations to show that ERK activation requires ordered phosphorylation events, with threonine phosphorylation as the second step being essential for catalytic activity.
11 citations - Molecular BiologyJournal of Molecular BiologyPeer-reviewed
Distinct allosteric networks in CDK4 and CDK6 in the cell cycle and in drug resistance
Wengang Zhang, Devin A. Bradburn, Gretchen Heidebrink…·Mardo Kõivomägi
This study identifies distinct allosteric networks in CDK4 and CDK6 that explain their differential kinase activity, inhibitor binding, and roles in cell cycle regulation and drug resistance.
7 citations - Cancer BiologyJournal of Chemical Information and ModelingPeer-reviewed
mTOR variants activation discovers PI3K-like cryptic pocket, expanding allosteric, mutant-selective inhibitor designs
Yonglan Liu, Wengang Zhang, Hyunbum Jang, Ruth Nussinov
The paper identifies a cryptic pocket in mTOR oncogenic variants through molecular dynamics simulations and suggests designing PI3K-like inhibitors to target this pocket for therapeutic benefit.
11 citations - BioinformaticsbioRxivPreprint
Anticancer Target Combinations: Network-Informed Signaling-Based Approach to Discovery
Bengi Ruken Yavuz, Hyunbum Jang, Ruth Nussinov
This paper develops a signaling-based method to identify optimal protein combinations for anticancer drug therapy, validated using patient-derived data and xenografts.
3 citations - Systems BiologybioRxivPreprint
Co-occurring Mutations in Different Genes Can Fuel Oncogenic Signaling and Serve as Metastatic Tumor Markers
Bengi Ruken Yavuz, Ugur Sahin, Hyunbum Jang…·Nurcan Tunçbağ
The paper identifies co-occurring mutation pairs in cancer genomes that are associated with metastasis and provides a tool for predicting metastatic potential.
1 citation - Systems Biologynpj Genomic MedicinePeer-reviewed
Neurodevelopmental disorders and cancer networks share pathways; but differ in mechanisms, signaling strength, and outcome
Bengi Ruken Yavuz, M. Kaan Arici, Habibe Cansu Demirel…·Nurcan Tunçbağ
This study compares neurodevelopmental disorders and cancer, finding shared pathways but differing in signaling strength and outcomes.
40 citationstop 2% - Molecular BiologybioRxivPreprint
Cell cycle progression mechanisms: slower cyclin-D/CDK4 activation and faster cyclin-E/CDK2
Wengang Zhang, Yonglan Liu, Hyunbum Jang, Ruth Nussinov
The paper investigates why cyclin-D/CDK4 drives the longer G1 phase while cyclin-E/CDK2 regulates the short G1/S transition, proposing slower activation for cyclin-D/CDK4 and faster for cyclin-E/CDK2, with implications for CDK4 inhibitor design.
10 citations - Genetic & Genomic MedicineFamilial CancerPeer-reviewed
Novel MAPK/AKT-impairing germline NRAS variant identified in a melanoma-prone family
Kevin M. Brown, Mai Xu, Michael R. Sargen…·Maria Teresa Landi
The paper identifies a novel NRAS variant in a melanoma-prone family and shows it impairs MAPK/AKT signaling while enhancing PI3K signaling.
3 citations - Molecular BiologyiSciencePeer-reviewed
The mechanism of full activation of tumor suppressor PTEN at the phosphoinositide-enriched membrane
Hyunbum Jang, Iris Nira Smith, Charis Eng, Ruth Nussinov
This study uses explicit solvent simulations to reveal how PTEN interacts with phosphoinositide-enriched membranes, elucidating its mechanism of activation and membrane anchoring.
64 citations