Author

Whitney Tamaki

University of California, San FranciscoORCID 0000-0002-1124-628XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 1 Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Organism:human· 2 Assay:CITE-seq· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Research Focus:host-pathogen & immune response· 1 Organism:mouse· 1

Frequent Co-Authors

Aidan F. WintersiD· 1 shared Anton Ogorodnikov· 1 shared Beatrice GiniiD· 1 shared Bertrand Z. YeungiD· 1 shared Byungjin HwangiD· 1 shared Chester E. ChamberlainiD· 1 shared Chun YeiD· 1 shared Clare L. AbramiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperGenomics

Aidan F. WintersORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Gain-of-function mutation in SKAP2 leads to type 1 diabetes and broader autoimmunity through hyperactive integrin signaling in myeloid cells

Courtney M. Tamaki, Chester E. Chamberlain, Clare L. Abram, Sumith Sundara Poojary, Jennifer Anne Bridge, Jennifer L. Matsuda, Whitney Tamaki, Niklas Rutsch, Lauren Spector, Wesley Dixon, Irina Proekt, Lisa R. Letourneau, Louis H. Philipson, Michael S. German, Mark Stuart Anderson, Clifford A. Lowell

bioRxiv · Apr 6, 2026 · PreprintImmunology

Actionable biological programs to enhance EGFR-targeted therapy response unveiled by single-cell lineage tracing in clinically relevant lung cancer models

Beatrice Gini, Whitney Tamaki, Johnny X. Yu, Dora Barbosa, Wei Wu, Yashar Pourmoghadam, Paul Allegakoen, Donghwa Kim, Sohit Miglani, Sarah Elmes, Victor R. Olivas, Hani Goodarzi, Trever Grant Bivona

This study uses single-cell lineage tracing and RNAseq to identify pre-existing resistant tumor subclones in lung cancer models and their transcriptional programs, revealing mechanisms of therapy resistance.

bioRxiv · May 19, 2025 · PreprintCancer Biology

SCITO-seq: single-cell combinatorial indexed cytometry sequencing

Byungjin Hwang, David S. Lee, Whitney Tamaki, Yang Sun, Anton Ogorodnikov, George C. Hartoularos, Aidan F. Winters, Bertrand Z. Yeung, Kristopher L. Nazor, Yun S. Song, Eric D. Chow, Matthew H. Spitzer, Chun Ye

SCITO-seq enables cost-effective profiling of over 10^5 cells using combinatorial indexing with dsc-seq, demonstrating feasibility in mixed cell lines and human lymphocytes.

Nature Methods · Aug 1, 2021Peer-reviewedGenomics