Author

Victoria Hawkins

University of AucklandORCID 0000-0002-1376-9682Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Russell G. SnelliD· 3 shared Jessie C. JacobseniD· 2 shared Klaus LehnertiD· 2 shared Andrew JiangiD· 1 shared B.L. HarrisiD· 1 shared Christine CouldreyiD· 1 shared Christopher Simon BawdeniD· 1 shared Clive J. McLaughlan· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersNeuroscience

Russell G. SnellORCID

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3 papers

Recent·Most cited

Evidence for glutamate excitotoxicity that occurs before the onset of striatal cell loss and motor symptoms in an ovine Huntington's Disease model.

Andrew Jiang, Linya You, Renée R. Handley, Victoria Hawkins, Suzanne J. Reid, Jessie C. Jacobsen, Stefano Patassini, Skye R. Rudiger, Clive J. McLaughlan, Jennifer M. Kelly, Paul John Verma, Christopher Simon Bawden, James F. Gusella, Marcy E. MacDonald, Henry John Waldvogel, , Russell G. Snell

The paper identifies transcriptional upregulation of glutamate receptors and downregulation of oxidative phosphorylation in an ovine HD model before neuronal loss and motor symptoms.

bioRxiv · Jun 20, 2023 · PreprintNeuroscience

Optimised multiplex amplicon sequencing for mutation identification using the MinION nanopore sequencer

Whitney Whitford, Victoria Hawkins, Kriebashne S. Moodley, Matthew J. Grant, Klaus Lehnert, Russell G. Snell, Jessie C. Jacobsen

The paper develops a multiplexing assay for MinION sequencing to identify genetic variants in small genomic regions, achieving accurate results for most targets despite sequencing biases.

Scientific Reports · May 20, 2022Peer-reviewedBioinformatics

Widespread cis-regulation of RNA-editing in a large mammal

Thomas Lopdell, Victoria Hawkins, Christine Couldrey, Kathryn Tiplady, Stephen R. Davis, B.L. Harris, Russell G. Snell, Mathew D. Littlejohn

The paper identifies cis-regulated RNA editing quantitative trait loci (edQTL) in cattle, linking them to gene expression and lactation traits.

RNA · Dec 10, 2018Peer-reviewedGenomics