Author

J. Clune

Yale UniversityORCID 0000-0002-2398-4634Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

J. Clune2 papers

Biology Disciplines

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Cancer Biology· 2 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Research Focus:differential expression· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2 Research Focus:drug response / drug discovery· 1 Approach:statistical model· 1

Frequent Co-Authors

K. OlinoiD· 3 shared A. Bacchiocchi· 2 shared H. KlugeriD· 2 shared A. CalderaiD· 1 shared A. Elliot· 1 shared A. Frey· 1 shared A. KodaiD· 1 shared A. M. Newman· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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3 shared papersCancer Biology

K. OlinoORCID

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Author profile →

3 papers

Recent·Most cited

Perturbational single-cell profiling of patient tumors defines lineage- and context-specific programs of innate immune resistance

C. Perry, A. Frey, Y. Fei, J. Wang, P. Costa, H. N. Amin, S. Ghadermarzi, D. Levine, W. Tong, A. Koda, M. Mackie, M. He, Y. Nie, K. Clulo, F. Ouerghi, , J.J. Ishizuka

The paper uses patient tumor samples to identify lineage- and context-specific mechanisms of innate immune resistance through perturbational single-cell RNA sequencing.

bioRxiv · Dec 12, 2025 · PreprintCancer Biology

Integrative molecular and clinical profiling of acral melanoma identifies LZTR1 as a key tumor promoter and therapeutic target

F. Farshidfar, C. Peng, C. Levovitz, J. Knight, A. Bacchiocchi, J. Su, K. Rhrissorrakrai, M. Yin, M. Sznol, S. Ariyan, J. Clune, K. Olino, L. Parida, J. Nikolaus, M. Zhang, , R. M. Halaban

bioRxiv · Apr 20, 2021 · PreprintCancer Biology

Circulating Clonally Expanded T Cells Reflect Functions of Tumor Infiltrating T Cells

L. E. Lucca, P.-P. Axisa, B. Lu, B. Harnett, S. Jessel, L. Zhang, K. Raddassi, L. Zhang, K. Olino, J. Clune, M. Singer, H. Kluger, D. A. Hafler

The paper examines circulating T cells sharing TCRs with tumor-infiltrating T cells in metastatic melanoma patients, finding they exhibit effector gene signatures similar to tumor T cells.

Journal of Experimental Medicine · Mar 2, 2021Peer-reviewedImmunology