Corinne Cruaud

This paper develops a field-friendly framework for characterizing coral holobionts using nanopore sequencing and bioinformatics pipelines, revealing reef-scale bacterial networks and host-specific associations.

FORK-seq maps DNA replication at single-molecule resolution in yeast, revealing previously missed initiation and termination events.

The paper analyzes APSE phage genomes from Hamiltonella symbionts in aphids, revealing recombination events and variable toxin regions.

The paper compares nanopore RNA-Seq and cDNA-Seq for transcriptome profiling in mouse brain and liver, finding that nanopore RNA-Seq is more efficient but cDNA-Seq introduces bias due to read truncation.

The paper investigates horizontal gene transfer in aphid symbionts, showing how B-vitamin biosynthesis genes are transferred between bacteria to establish new nutritional symbioses.

The paper uses nanopore sequencing and a neural network to identify BrdU-labelled DNA tracts in yeast during replication, showing they align with early-firing origins.

This paper introduces a de novo clustering algorithm for long-read transcriptomics data, showing improved performance for Oxford Nanopore reads and non-model species.

The paper identifies a third bacterial symbiont in Cinara strobi aphids and shows that S. symbiotica has a highly eroded genome, suggesting ongoing symbiont replacement.

The paper presents a high-quality de novo genome assembly of Dekkera bruxellensis UMY321 using Nanopore and Illumina sequencing, providing insights into genomic variability within the species.

The paper analyzes global ocean viruses to uncover their genomic diversity and ecological roles in biogeochemical cycles.

The paper evaluates nanopore-only genome assemblies of yeast isolates using MinION, showing improved contiguity and structural variant detection compared to Illumina-only assemblies.