Author

John P Cooper

The University of Texas at AustinORCID 0000-0002-4867-0367Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Agnisrota MazumderiD· 1 shared Ahmed A. A. AmineiD· 1 shared Bassem Al‐SadyiD· 1 shared Can GoksaliD· 1 shared Daniel R. ScolesiD· 1 shared David D. BushartiD· 1 shared Dhananjay YellajoshyulaiD· 1 shared Haoran HuangiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Agnisrota MazumderORCID

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2 papers

Recent·Most cited

Discrete Subdomains Establish Epigenetic Diversity in Subtelomeric Heterochromatin

Agnisrota Mazumder, John P Cooper, Can Goksal, Rosario Y. J. Brockhausen, Jonas M. Schauß, Jasbeer Singh Khanduja, Richard Inho Joh, Ahmed A. A. Amine, Johannes J Groos, Junko Kanoh, Mo Motamedi, Ilya J. Finkelstein, Bassem Al‐Sady, Sigurd J Braun

The paper identifies distinct epigenetic subdomains in subtelomeric heterochromatin of S. pombe, showing position-specific silencing and the role of structural variants in epigenetic stability.

bioRxiv · Sep 25, 2025 · PreprintGenomics

Altered Capicua expression drives regional Purkinje neuron vulnerability through ion channel gene dysregulation in Spinocerebellar ataxia type 1

Ravi Chopra, David D. Bushart, John P Cooper, Dhananjay Yellajoshyula, Logan M Morrison, Haoran Huang, Hillary P. Handler, Luke J. Man, Warunee Dansithong, Daniel R. Scoles, Stefan M. Pulst, Harry T. Orr, Vikram G. Shakkottai

Human Molecular Genetics · Sep 21, 2020Peer-reviewedNeuroscience