Author

Emily A. Kawaler

New York UniversityORCID 0000-0002-7438-7282Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:proteomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Adriana HeguyiD· 1 shared Akihide YoshimiiD· 1 shared Alex KentsisiD· 1 shared Amanda AckermanniD· 1 shared Amanda W. LundiD· 1 shared Aristotelis TsirigosiD· 1 shared Avantika DhabariaiD· 1 shared Cristina H HajduiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperCancer Biology

Adriana HeguyORCID

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3 papers

Recent·Most cited

Clonal Heterogeneity in Human Pancreatic Ductal Adenocarcinoma and Its Impact on Tumor Progression

Despoina Kalfakakou, Daniel C. Cameron, Emily A. Kawaler, Motoyuki Tsuda, Lidong Wang, Xiaohong Jing, Cristina H Hajdu, Dylan L. Tamayo, Yoona Shim, Amanda Ackermann, Daniel Weissinger, Hayley Zimny, Rosmel Hernandez, Matthew A. Beier, Dacia Dimartino, , Diane M. Simeone

This study analyzes clonal heterogeneity in human pancreatic ductal adenocarcinoma using single-cell and spatial transcriptomics, revealing transcriptional continua, clonal transitions, and spatially dispersed clones associated with metastasis.

bioRxiv · Feb 11, 2025 · PreprintCancer Biology

BlackSheep: A Bioconductor and Bioconda package for differential extreme value analysis

Lili M. Blumenberg, Emily A. Kawaler, MacIntosh Cornwell, Shaleigh A. Smith, Kelly V. Ruggles, David Fenyö

BlackSheep identifies molecules aberrantly enriched in small sample cohorts using non-parametric differential extreme value analysis.

Journal of Proteome Research · Jun 24, 2021Peer-reviewedBioinformatics

ProteomeGenerator: A framework for comprehensive proteomics based on de novo transcriptome assembly and high-accuracy peptide mass spectral matching

Paolo Cifani, Avantika Dhabaria, Zining Chen, Akihide Yoshimi, Emily A. Kawaler, Omar Ibrahim Abdel-Wahab, John Thomas Poirier, Alex Kentsis

ProteomeGenerator enables sample-specific proteome discovery by integrating transcriptome sequencing and high-accuracy mass spectrometry, identifying non-canonical protein isoforms and improving proteogenomic analysis.

Journal of Proteome Research · Oct 8, 2018Peer-reviewedBioinformatics