Author

Joshua D. Croteau

BioLegend (United States)ORCID 0000-0002-8142-0482Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:cell type annotation· 3 Assay:scRNA-seq· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:cell signaling & trafficking· 1 Assay:CITE-seq· 1

Frequent Co-Authors

Alexander V. ChervonskyiD· 2 shared Ananda W. GoldrathiD· 2 shared André Luiz Zorzetto-FernandesiD· 2 shared Andrea Lebron Figueroa· 2 shared Anna-Maria GlobigiD· 2 shared Antoine FreuchetiD· 2 shared Bana JabrìiD· 2 shared Charlotte J. ImianowskiiD· 2 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersImmunology

Alexander V. ChervonskyORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

immgenT: A Comprehensive Reference of Convergent T-cell States in the Mouse

Ian Magill, Odhran Casey, Dania Mallah, Siba Smarak Panigrahi, Leon Lee Zhou, Olga Barreiro del Río, Derek J. Bangs, Gavyn Chern Wei Bee, Samantha M. Borys, Josh Choi, Can Ergen, Enxhi Ferraj, Maurizio Fiusco, Antoine Freuchet, Giovanni Galletti, , the immgenT project

immgenT creates a comprehensive T-cell molecular atlas across mouse organs and disease states, identifying 8 lineages and 107 clusters using deep generative models and integrating external datasets.

bioRxiv · Sep 2, 2026 · PreprintImmunology

Genomic Specificity of Anti-TCR mAbs determined by single-cell RNAseq

Ian Magill, Val Piekarsa, Σοφία Κοσσίδα, Joshua D. Croteau, Amy Huei‐Yi Lee, ROBERT S. BALDERAS, David Zemmour, Christophe O. Benoist, immgenT Project, Aaron C. Liu, Alexander V. Chervonsky, Alexandra Cassano, Alia Welsh, Ananda W. Goldrath, Andrea Lebron Figueroa, , Xutong Gong

The paper identifies TCR-V gene usage patterns in T cells sorted by anti-TCR mAbs using single-cell RNAseq and finds enriched ERV1-family LTR expression in specific TRBV regions.

The Journal of Immunology · Aug 1, 2025Peer-reviewedImmunology

Joint single-cell measurements of surface proteins, intracellular proteins and gene expression with icCITE-seq

Kelvin Y. Chen, Yusuke Takeshima, André Luiz Zorzetto-Fernandes, Kenichi Makino, Tatsuya Kibayashi, Mayu Hata, Kenji Ichiyama, Joshua D. Croteau, Kevin Taylor, Shimon Sakaguchi

This paper introduces icCITE-seq, a method that simultaneously measures surface and intracellular proteins and gene expression in single cells, validated in primary human T cells.

bioRxiv · Jan 11, 2025 · PreprintImmunology