Author

Nikhil V. Munshi

The University of Texas Southwestern Medical CenterORCID 0000-0002-8397-100XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Gary C. HoniD· 2 shared Anjana SundarrajaniD· 1 shared Ashlesha GogateiD· 1 shared ASHLEY E. DEDERICHiD· 1 shared Boxun LiiD· 1 shared Bruce A. PosneriD· 1 shared Carlos A. Pinzón-ArteagaiD· 1 shared Chikara TakeuchiiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersGenomics

Gary C. HonORCID

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2 papers

Recent·Most cited

Benchmarking and optimizing Perturb-seq in differentiating human pluripotent stem cells

Sushama Sivakumar, Yihan Wang, Sean C. Goetsch, Vrushali Pandit, Lei Wang, Huan Zhao, Anjana Sundarrajan, Daniel A. Armendariz, Chikara Takeuchi, Minnie Deng, Mpathi Nzima, Wei-Chen Chen, ASHLEY E. DEDERICH, Lauretta El Hayek, Taosha Gao, , Nikhil V. Munshi

This study benchmarks and optimizes Perturb-seq in human pluripotent stem cells, identifying shared regulatory networks during cardiomyocyte differentiation.

Stem Cell Reports · Nov 13, 2025Peer-reviewedGenomics

Rational reprogramming of cellular states by combinatorial perturbation

Jialei Duan, Boxun Li, Minoti Bhakta, Shiqi Xie, Pei Zhou, Nikhil V. Munshi, Gary C. Hon

The paper develops Reprogram-Seq to screen TF cocktails for reprogramming cell states, identifying a 3-TF combination that reprograms MEFs to epicardial-like cells.

Cell Reports · Jun 1, 2019Peer-reviewedGenomics