Marta Łuksza

The paper maps T cell epitopes in SARS-CoV-2, showing that immunodominant regions are conserved across variants and important for immune surveillance.

This paper analyzes the sequence-dependent energy landscapes of MHC-peptide binding, showing class-specific nonlinearities and their implications for immune recognition and escape.

This paper develops methods to predict viral evolution using integrated data on sequences, epidemiology, antigenicity, and phenotypes, providing vaccine strain selection insights.

This study identifies molecular and immune features associated with response to anti-PD-(L)1 therapy in NSCLC using a cohort of 393 patients.

The paper analyzes the 2014 Ebola virus outbreak in Sierra Leone, finding that different viral clades have varying growth rates and reproduction numbers, which affect epidemic dynamics.