Xi Zhang

Self-Reactive B Cells in Artery Tertiary Lymphoid Organs Encode Pathogenic High Affinity Autoantibody in Atherosclerosis

The paper identifies self-reactive B cells in atherosclerosis-associated tertiary lymphoid organs that produce high-affinity autoantibodies contributing to disease progression.

TCRfinder: Improved TCR virtual screening for novel antigenic peptides with tailored language models

TCRfinder improves TCR-peptide binding prediction using tailored language models, achieving higher accuracy than existing methods in identifying interacting TCRs and tumor neoantigens.

VirTect: a computational method for detecting virus species from RNA-Seq and its application in head and neck squamous cell carcinoma

VirTect detects virus species from RNA-seq data in head and neck squamous cell carcinoma, identifying 22 HPV-induced cases with better accuracy than existing methods.