Author

Samir Taoudi

The University of MelbourneORCID 0000-0002-9036-9244Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Organism:mouse· 5 Research Focus:cell type annotation· 3 Assay:bulk RNA-seq· 2 Research Focus:cell-cell communication· 2 Research Focus:differential expression· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1

Frequent Co-Authors

Christine BibeniD· 4 shared Shalin H. NaikiD· 3 shared Tom S. WeberiD· 3 shared Alexandra L. GarnhamiD· 1 shared Alison FarleyiD· 1 shared Amelia Dunstone· 1 shared Andrew J. KuehiD· 1 shared Anthony HadlaiD· 1 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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4 shared papersDevelopmental Biology

Christine BibenORCID

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Author profile →

5 papers

Recent·Most cited

Clonal analysis of fetal hematopoietic stem/progenitor cell subsets reveals how post-transplantation capabilities are distributed

Olivia J. Stonehouse, Christine Biben, Tom S. Weber, Alexandra L. Garnham, Katie A. Fennell, Alison Farley, Antoine F. Terreaux, Warren S. Alexander, Mark A. Dawson, Shalin H. Naik, Samir Taoudi

The paper compares functional properties of fetal and adult hematopoietic stem/progenitor cells through transplantation, revealing differences in lineage bias and clonal multi-lineage differentiation.

Stem Cell Reports · Aug 1, 2024Peer-reviewedDevelopmental Biology

A Risk-reward Examination of Sample Multiplexing Reagents for Single Cell RNA-Seq

Daniel V. Brown, Casey J. A. Anttila, Ling Ling, Patrick Grave, Tracey M. Baldwin, Ryan B. Munnings, Anthony J. Farchione, Vanessa L. Bryant, Amelia Dunstone, Christine Biben, Samir Taoudi, Tom S. Weber, Shalin H. Naik, Anthony Hadla, Holly E. Barker, , Rory J. Bowden

This study evaluates sample multiplexing reagents and protocols for scRNA-Seq, finding that workflow improvements and reagent choice impact data quality and cost-effectiveness.

Genomics · Jan 19, 2024Peer-reviewedGenomics

LoxCode in vivo clonal barcoding resolves mammalian epiblast contribution to fetal organs

Tom S. Weber, Christine Biben, Denise C. Miles, Stefan P. Glaser, Sara Tomei, Michael C. Lin, Andrew J. Kueh, Martin Pal, Stephen Zhang, Patrick Tam, Samir Taoudi, Shalin H. Naik

The paper develops LoxCode barcoding to trace clonal fate of epiblast cells in vivo, finding lineage biases and tissue-specific contributions across fetal development.

bioRxiv · Jan 2, 2023 · PreprintDevelopmental Biology

Mesoderm-Derived PDGFRA+ Cells Regulate the Emergence of Hematopoietic Stem Cells in the Dorsal Aorta

Vashe Chandrakanthan, Prunella Rorimpandey, Fabio Zanini, Diego Chacon Fajardo, Jake Olivier, Swapna Mahurkar Joshi, Young Chan Kang, Kathy Knezevic, Yizhou Huang, Qiao Qiao, Rema A. Oliver, Ashwin Unnikrishnan, Daniel R. Carter, Brendan Lee, Chris Brownlee, , John E. Pimanda

The paper shows that mesoderm-derived PDGFRA+ stromal cells in the AGM region support endothelial-to-hematopoietic transition and LT-HSC generation.

Nature Cell Biology · Jul 28, 2022Peer-reviewedDevelopmental Biology

Quantitation analysis by flow cytometry shows that Wt1 is required for development of the proepicardium and epicardium

Christine Biben, Bette Borobokas, M.K. Menon, Lynne Hartley, Richard Paul Harvey, Samir Taoudi, Owen W.J. Prall

The paper uses flow cytometry to analyze the role of Wt1 in epicardial development, finding that Wt1 is essential for formation and maintenance rather than promoting mesenchymal transition.

bioRxiv · Oct 6, 2020 · PreprintDevelopmental Biology