Daniel Baum

This study shows that sharks and rays have cartilage canals in their adult skeletons, which are vascular but do not trigger endochondral bone formation, suggesting an ancient role in nutrient transport.

The paper develops a semi-automatic workflow for tracing and tracking filopodia in 4D two-photon microscopy images using intensity data without segmentation.

TomoSegNet improves membrane segmentation in cryo-electron tomography by using synthetic data generated with a biophysical simulator, outperforming existing methods in recovering distorted membranes.

The paper quantifies mitotic spindle and chromosome segregation dynamics in C. elegans embryos, finding that spindle elongation scales with cell size while chromosome segregation remains invariant.

FishExplorer integrates multimodal brain data from larval zebrafish to enable circuit analysis and hypothesis generation.

The paper uses correlative light and electron microscopy to identify synaptic motifs in larval zebrafish that support visual motion processing.

The paper introduces a method to predict synaptic connectivity from neural tissue reconstructions, showing three assumptions can explain connectivity in mouse and human datasets.

This paper introduces a deep learning model for orientation estimation of macromolecules in cryo-ET images using synthetic data and shows promising results.

The paper develops a multi-species brain atlas platform for comparative neuroscience in teleost fish, revealing species-specific neural structures and enabling gene expression and activity comparisons.

This paper introduces simulation-based Bayesian inference to efficiently identify generative models in connectomics by inferring wiring rule parameters from empirical data.