Author

Hunter O. Woosley

Chan Zuckerberg Biohub San FranciscoORCID 0009-0002-8097-8561Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Assay:imaging· 1 Organism:mouse· 1

Frequent Co-Authors

Carolina AriasiD· 2 shared Shalin B. MehtaiD· 2 shared Soorya PradeepiD· 2 shared Adrián JacoboiD· 1 shared Akilandeswari BalasubramanianiD· 1 shared Alejandro MatíaiD· 1 shared Chad LiuiD· 1 shared Christian FoleyiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersMicrobiology

Carolina AriasORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

V-SWITCH: A single-vector OFF-to-ON fluorescent reporter of live RNA virus infections

Miguel Cid-Rosas, Michelle E. Grunberg, Alejandro Matía, See-Chi Lee, Hunter O. Woosley, Soorya Pradeep, Shivali Kanwar, Sudip Khadka, Shalin B. Mehta, Ruth Hüttenhain, Vincent Turon‐Lagot, Carolina Arias

V-SWITCH is a fluorescent reporter that detects viral infections by switching from OFF to ON fluorescence, enabling live-cell tracking and screening for antiviral strategies.

bioRxiv · Apr 9, 2026 · PreprintMicrobiology

Robust virtual staining of landmark organelles

Ziwen Liu, Eduardo Hirata-Miyasaki, Soorya Pradeep, Johanna V. Rahm, Christian Foley, Talon Chandler, Ivan E. Ivanov, Hunter O. Woosley, Tiger Lao, Akilandeswari Balasubramanian, Rita Marreiros, Chad Liu, Manuel D. Leonetti, Ranen Aviner, Carolina Arias, , Shalin B. Mehta

The paper develops robust virtual staining methods for cellular landmarks using deep learning, showing improved performance across cell types and imaging conditions.

bioRxiv · May 31, 2024 · PreprintBioinformatics