Circular RNAs in the ageing African turquoise killifish
Franziska MetgeiD, Yumi KimiD, Jorge Bouças, Christoph DieterichiD, Dario Riccardo ValenzanoiD
Abstract
CircRNAs are a subgroup of RNAs which form a circular molecule. During the splicing process the 3 splice donor loops back to form a covalent bond with an upstream 5 splice acceptor instead of the downstream 5 acceptor. The majority of circRNAs are non-coding splice isoforms of protein coding genes showing tissue and time specific expression. Because circRNAs have no 5 cap nor 3 poly-A tail, they degrade slower than their linear host genes. Only few studies were able to show a specific function for circRNAs.\n\nIn this work we sequenced 23 samples from three tissues (brain, muscle, and gut) at three (two for gut) time points throughout the life of the naturally short-lived African turquoise killifish (Nothobranchius furzeri). We identified 1810 unique circRNAs, half of which are conserved with humans and mice. With this study we provide a comprehensive atlas to the circRNA landscape in the ageing African turquoise killifish, which serves as a novel resource to the circRNA as well as the ageing community.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Global accumulation of circRNAs during aging in Caenorhabditis elegans
Mariela Cortés-López, Matthew Gruner, … Pedro Miura·BMC GenomicsPeer-reviewed·Jan 3, 2018
- BodyMap transcriptomes reveal unique circular RNA features across tissue types and developmental stages
Tong Zhou, Xueying Xie, … Wanjun Gu·RNAPeer-reviewed·Aug 9, 2018
- A miRNA catalogue and ncRNA annotation of theshort-living fish Nothobranchius furzeri
Mario Baumgart, Emanuel Barth, … Alessandro Cellerino·BMC GenomicsPeer-reviewed·Sep 5, 2017
- Circular RNAs exhibit exceptional stability in the aging brain and serve as reliable age and experience indicators
Ken Kirio, Inés Lucía Patop, … Sebastián Kadener·Cell ReportsPeer-reviewed·Apr 1, 2025
- CircAge: A Comprehensive Resource for Aging-Associated Circular RNAs Across Species and Tissues
Xin Dong, Zhen Zhou, … Yonghan He·Genomics Proteomics & BioinformaticsPeer-reviewed·May 12, 2025
- Transcriptional profiling of aging tissues from female and male African turquoise killifish
Alan Xu, Bryan B. Teefy, … Bérénice Anath Benayoun·Scientific DataPeer-reviewed·Oct 12, 2023