bioRxivNeurosciencePreprint
Translating the Post-Mortem Brain Multi-Omics Molecular Taxonomy of Alzheimer's Dementia to Living Humans
Yasser Iturria‐MedinaiD, Victoria N. PooleiD, Andrea R. ZammitiD, Lei YuiD, Shinya TasakiiD, Joon Hwan HongiD, Kátia de Paiva LopesiD, Caio M.P.F. Batalha, Abdur Raquib RidwaniD, Ricardo A. VialleiD, Lazaro M. Sanchez-RodrigueziD, Maiya Rachel GeddesiD, Peter M. AbadiriD, Eric A. OrtlundiD, Philip L. De JageriD, Vilas MenoniD, Michal Schnaider BeeriiD, Aron S. BuchmaniD, Yishai LeviniD, David MorgensterniD, Julie A. SchneideriD, Rima F Kaddurah-DaoukiD, Tony Wyss‐CorayiD, Nicholas T. SeyfriediD, Konstantinos ArfanakisiD, , David Alan BennettiD
Abstract
Alzheimers disease (AD) dementia is characterized by significant molecular and phenotypic heterogeneity, which confounds its mechanistic understanding, diagnosis, and effective treatment. In this study, we harness the most comprehensive dataset of paired ante-mortem blood omics, clinical, psychological, and post-mortem brain multi-omics data and neuroimaging to extensively characterize and translate the molecular taxonomy of AD dementia to living individuals. First, utilizing a comprehensive integration of eight complementary molecular layers from brain multi-omics data (N = 1,189), we identified three distinct molecular AD dementia subtypes exhibiting strong associations with cognitive decline, sex, psychological traits, brain morphology, and characterized by specific cellular and molecular drivers involving immune, vascular, and oligodendrocyte precursor cells. Next, in a significant translational effort, we developed predictive models to convert these advanced brain-derived molecular profiles (AD dementia pseudotimes and subtypes) into blood-, MRI- and psychological traits-based markers. The translation results underscore both the promise of these models and the opportunities for further enhancement. Our findings enhance the understanding of AD heterogeneity, underscore the value of multi-scale molecular approaches for elucidating causal mechanisms, and lay the groundwork for the development of novel therapies in living persons that target multi-level brain molecular subtypes of AD dementia.
- organism: human
- assay: bulk RNA-seq
- assay: multiome
- assay: imaging
- research focus: cell type annotation
- research focus: clustering
- research focus: dimensionality reduction
- approach: statistical model
- Citations
- 1
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Multi-omic subtypes of Alzheimer's dementia are differentially associated with psychological traits
Andrea R. Zammit, Lei Yu, … David Alan Bennett·bioRxiv·Feb 21, 2025
- Integration of aged brain multi-omics reveals cross-system mechanisms underlying Alzheimer's disease heterogeneity
Lucas P Scheidemantel, Kátia de Paiva Lopes, … Ricardo A. Vialle·Cell ReportsPeer-reviewed·Apr 1, 2026
- Brain cross-omics integration in Alzheimer's disease
Abdallah M. Eteleeb, Brenna C. Novotny, … Oscar Harari·medRxiv·Dec 10, 2022
- Human brain aging heterogeneity observed from multi-region omics data reveals a subtype closely related to Alzheimer's disease
Shouneng Peng, Erming Wang, … Zhidong Tu·bioRxiv·Mar 1, 2024
- Identification and Validation of New Molecular Subtypes within the Early and Late Mild Cognitive Impairment Stages of Alzheimer's Disease
Bowei Li, Shashank Yadav, … Alzheimer’s Disease Neuroimaging Initiative·medRxiv·Apr 6, 2023
- Brain Multi-Omic Subtypes of Neuroticism Reveal Molecular Signatures linked to Alzheimer's Disease
Andrea R. Zammit, Katia de Pavia Lopes, … David Alan Bennett·bioRxiv·May 19, 2025