bioRxivCancer Biology
Mapping the tumor stress network reveals dynamic shifts in the stromal oxidative stress response
C. Lior, D. Barki, D. Kelsen, C. Iacobuzio-Donahue, R. Scherz-Shouval
Abstract
The tumor microenvironment (TME) is a challenging environment where cells must cope with stressful conditions such as fluctuating pH levels, hypoxia, and free radicals. In response, stress pathways are activated, which can both promote and inhibit tumorigenesis. In this study, we set out to characterize the stress response landscape across four carcinomas: breast, pancreas, ovary, and prostate tumors, focusing on five pathways: Heat shock response, oxidative stress response, unfolded protein response, hypoxia stress response, and DNA damage response. Using a combination of experimental and computational methods, we create an atlas of the stress response landscape across various types of carcinomas. We find that stress responses are heterogeneously activated in the TME, and highly activated near cancer cells. Focusing on the non-immune stroma we find, across tumor types, that NRF2 and the oxidative stress response are distinctly activated in immune-regulatory cancer-associated fibroblasts and in a unique subset of cancer associated pericytes. Our study thus provides an interactome of stress responses in cancer, offering new ways to intersect survival pathways within the tumor, and advance cancer therapy.
- organism: human
- assay: bulk RNA-seq
- research focus: cell type annotation
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: experimental assay
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Sporadic activation of an oxidative stress-dependent NRF2-p53 signaling network in breast epithelial spheroids and premalignancies
E. J. Pereira, J. S. Burns, … K. Janes·bioRxiv·Dec 5, 2019
- Lineage plasticity of the integrated stress response is a hallmark of cancer evolution.
Shiqi Diao, Jia Yi Zou, … Antonis E. Koromilas·bioRxiv·Feb 10, 2025
- A pan-cancer metabolic atlas of the tumor microenvironment
N. Rohatgi, U. Ghoshdastider, … A. J. Skanderup·bioRxiv·Oct 16, 2020
- A stress-NRF2 response axis polarises tumor macrophages and undermines immunotherapy
Dominik J. Schaer, Nadja Schulthess-Lutz, … Florence Vallelian·bioRxiv·Jul 2, 2025
- Regulatory network controlling tumor-promoting inflammation in human cancers
Zhe Ji, Lizhi He, … Kevin Struhl·bioRxiv·Jun 20, 2018
- Activation of the cGAS-STING pathway contributes to cancer-related fatigue in a murine model of head and neck cancer
Brandon M. Chelette, Abate Assefa Bashaw, … Robert Dantzer·Brain Behavior and ImmunityPeer-reviewed·Jun 28, 2026