Sign in
Cancer BiologybioRxiv
Preprint

Single-cell characterization of tumor immune landscapes in colorectal cancer humanized mice

Sanne BootsmaiD, Job SarisiD, Andrew Y. F. Li YimiD, Kristiaan LenosiD, Felipe A. Vieira BragaiD, Joep GrootjansiD, Louis VermeuleniD

Abstract

Colorectal cancer (CRC) displays inter-patient heterogeneity in molecular tumor features and immune cell composition, which influence therapy response. Humanized immune system (HIS) mouse models offer a promising in vivo model to study human tumor-immune interactions, yet their ability to recapitulate the CRC tumor immune microenvironment at single-cell resolution remains incompletely defined. Here, we performed single-cell RNA sequencing of systemic and tumor-infiltrating human immune cells in HIS mice bearing human CRC tumors and benchmarked these data against reference datasets of healthy human spleens and primary CRC tumors. Major immune lineages and transcriptional programs characteristic of the human systemic immune compartment were identified, and HIS mouse tumors developed complex, human-like immune infiltrates. Tumor-infiltrating immune cells comprised diverse T cell, myeloid, natural killer, and B cell populations, including exhausted T cell states marked by expression of PDCD1, TIGIT, HAVCR2, LAG3, and CTLA4. We further demonstrate CRC consensus molecular subtype-associated spatial differences in immune infiltration. Collectively, our findings support the use of HIS mice as a relevant model for studying CRC immune landscapes and preclinical evaluation of immunomodulatory therapies.

PDFDOI

02 /Specification & Classification

Click any tag to browse matching papers

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.

Similarity Map
SelectedSame fieldCross-field
THISOliveira '25Ran '24Mastel '26Yihao '22Raynaud '25Li '22
71% semantic matchCancer Biology
Michelli F. Oliveira, Juan P. Romero, Meii Chung+12 more·Nature Genetics·Jun 1, 2025· 443 citations