bioRxivSystems BiologyPreprint
Systems analysis of metabolic responses to a mixed meal test in an obese cohort reveals links between tissue metabolism and the gut microbiota
Peishun LiiD, Boyang JiiD, Dimitra LappaiD, Abraham Stijn MeijnikmaniD, Lisa M. OlssoniD, Ömrüm AydiniD, Sjoerd C. BruiniD, Arnold W. J. M. van de LaariD, Valentina TremaroliiD, Hao LuoiD, Jun GengiD, Kimberly A. KrautkrameriD, Annika LundqvistiD, Hilde HerremaiD, Albert Kornelis GroeniD, Victor E. A. GerdesiD, Thue Walter SchwartziD, Fredrik BäckhediD, Max NieuwdorpiD, Louise E. OlofssoniD, Jens NielseniD
Abstract
Individuals with prediabetes and type 2 diabetes mellitus (T2DM) have poor ability to adapt to diet-triggered perturbations. We investigated global metabolic responses to a mixed meal test (MMT) in morbidly obese individuals with different diabetic status by performing plasma metabolomic profiling. Abnormal metabolism of carbohydrates, (branched-chain) amino acids, fatty acids and acylcholines in individuals with (pre)diabetes was observed. Moreover, differences in metabolic responses were associated with altered fecal metagenomics and transcriptomes of liver, jejunum and adipose tissues, which revealed a modified gut microbiome and multi-tissue metabolism in individuals having insulin resistance. Finally, using integrative machine learning models, we built a predictive model based on metabolomics data after 2h MMT, and identified possible new biomarkers for glycemic control including N-acetylaspartate and phenylalanine-derived metabolites that may be useful for diagnosis, intervention and prevention of T2DM.
- organism: human
- assay: metabolomics
- research focus: differential expression
- research focus: gene regulatory network inference
- research focus: benchmarking
- research focus: database / resource
- approach: statistical model
- approach: machine learning (classical)
- Citations
- 2
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Microbiome-derived metabolites reproduce the mitochondrial dysfunction and decreased insulin sensitivity observed in type 2 diabetes
M. J. Ormsby, H. Hulme, … D. M. Wall·bioRxiv·Aug 2, 2020
- Machine learning reveals time-varying microbial predictors with complex effects on glucose regulation
O. Aasmets, K. Lüll, … E. Org·bioRxiv·Aug 13, 2020
- Identification of specific gut bacteria and metabolomic signatures related to Myocardial Insulin Resistance in Type 2 Diabetes
Xingpeng Xiao, Andreea Ciudin, … José Raúl Herance·bioRxiv·Jan 11, 2026
- Fecal Dysosmobacter spp. concentration is linked to plasma lipidome in insulin-resistant individuals with overweight, obesity and metabolic syndrome
Camille Petitfils, Clara Depommier, … Patrice D. Cani·Lipids in Health and DiseasePeer-reviewed·Jun 6, 2025
- Functional characterisation of gut microbiota and metabolism in Type 2 diabetes indicates that Clostridiales and Enterococcus could play a key role in the disease
M. Mora-Ortiz, A. Oregioni, S. P. Claus·bioRxiv·Nov 9, 2019
- Multi-omics investigation of spontaneous T2DM macaque emphasizes gut microbiota could up-regulate the absorption of excess palmitic acid in the T2DM progression
Xu Liu, Yuchen Xie, … Jing Li·bioRxiv·Oct 17, 2024