bioRxivDevelopmental BiologyPreprint
Doxycycline Significantly Enhances Induction of iPSCs to Endoderm by Enhancing survival via AKT Phosphorylation
Cristina Esteva‐FontiD, Tao Su, Caitlin PeasleeiD, Caroline C. DuwaertsiD, Ke Liu, Marisa Wong MedinaiD, Jacquelyn J. MaheriD, Aras N. MattisiD
Abstract
Induced pluripotent stem cells (iPSCs) provide an important tool for the generation patient-derived cells including hepatocyte-like cells via developmental cues through an endoderm intermediate. However, most iPSCs fail to differentiate into endoderm, with induction resulting in apoptosis. To address this issue, we built upon published methods to develop an improved protocol with our discovery that doxycycline dramatically enhances the iPSC to endoderm differentiation efficiency by inhibiting apoptosis and promoting proliferation via the AKT pathway. We tested this new protocol in more than 70 iPSC lines with consistent formation of complete sheets of endoderm in 90%. Endoderm generated by our method achieves similar transcriptomic profiles, including FOXA2, HNF1{beta}, CXCR4, and SOX17 positive cells, and the ability to be further differentiated. Furthermore this method achieves a four-fold increase in endoderm cell number and will accelerate studies of human diseases in vitro and facilitate the expansion of iPSC-derived cells for transplantation studies.
- organism: human
- assay: bulk RNA-seq
- research focus: cell type annotation
- research focus: differential expression
- approach: experimental assay
- Citations
- 2
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Depolymerizing F-actin accelerates the exit from pluripotency to enhance stem cell-derived islet differentiation
Nathaniel J. Hogrebe, Mason D. Schmidt, … Jeffrey R. Millman·Nature CommunicationsPeer-reviewed·Apr 2, 2026
- MIXL1 Activation in Endoderm Differentiation ofHuman Induced Pluripotent Stem Cells
Pierre Osteil, Sarah Withey, … Patrick Tam·Stem Cell ReportsPeer-reviewed·Apr 24, 2025
- Transcriptomically-guided mesendoderm induction of human pluripotent stem cells using a systematically defined culture scheme
R. L. Carpenedo, S. Y. Kwon, … W. L. Stanford·bioRxiv·Feb 26, 2019
- Modulation of WNT, Activin/Nodal and MAPK Signaling Pathways Increases Arterial Hemogenic Endothelium and Hematopoietic Stem/Progenitor Cell Formation During Human iPSC Differentiation
Y. Li, J. Ding, … A. Larochelle·bioRxiv·Feb 21, 2023
- Developmental regulation of endothelial-to-hematopoietic transition from induced pluripotent stem cells
Rachel Wellington, Xiaoyi Cheng, … Sergei R. Doulatov·Stem Cell ReportsPeer-reviewed·Sep 23, 2025
- The transcription factor FoxO1 is required for the establishment of the human definitive endoderm
Joshua A. Nord, Daniel Schill, … Lisa Ann Cirillo·bioRxiv·Dec 22, 2020