Plant Pathogens and Fungal Diseases

Fusarium graminearum copper amine-oxidases redundantly increase virulence by converting tryptamine from hydrolyzed plant defense compounds into auxin

This study shows that Fusarium graminearum uses copper amine-oxidases to convert plant defense compounds into auxin, enhancing virulence.

Genome sequence resources from three isolates of the apple canker pathogen Neonectria ditissima infecting forest trees.

The paper presents genome assemblies of three N. ditissima isolates infecting different host trees, highlighting their completeness and relevance due to limited prior genomic data.

Comparative genomics and transcriptomics reveal differences in effector complement and expression between races of Fusarium oxysporum f. sp. lactucae

This study compares the genome and transcriptome of two races of Fusarium oxysporum f. sp. lactucae, identifying differences in effector genes and expression patterns between them.

Host specialization defines the emergence of new fungal plant pathogen populations

This study identifies evolutionary signatures of host specialization in Zymoseptoria tritici, showing distinct population structures and potential speciation driven by divergence between wild and domesticated host grasses.

Comparative pan-genomics reveals extensive variation in secondary metabolism and the non-coding repertoire of clinically-relevant Fusarium solani species complex members

This study compares genomes of clinically relevant Fusarium solani species complex members to reveal extensive gene and non-coding RNA variation, secondary metabolism diversity, and horizontal gene transfer patterns.

Two new species of Graphium (Microascales, Ascomycota) associated with pine-infesting bark beetles in China

The paper identifies two new Graphium species associated with pine-infesting bark beetles in China using phylogenetic analysis of fungal isolates.

Complete genome of the Medicago anthracnose fungus, Colletotrichum destructivum, reveals a mini-chromosome-like region within a core chromosome.

The paper reports the complete genome of Colletotrichum destructivum, identifying a 1.2 Mb species-specific region with accessory chromosome features and segmental duplications linked to pathogenicity.

Genome analysis of the esca-associated Basidiomycetes Fomitiporia mediterranea, Fomitiporia polymorpha, Inonotus vitis, and Tropicoporus texanus reveals virulence factor repertoires characteristic of white-rot fungi

The paper presents genome sequences of four esca-associated Basidiomycetes, identifies virulence factors, and highlights their evolutionary patterns related to plant pathogenesis.

In vitro bio-activity of three potential antagonistic fungi against selected plant pathogens in Ghana

This study evaluates the bio-activity of three fungi against seven plant pathogens using dual culture assays on PDA plates, finding Trichoderma asperellum most effective.

Genomic, effector protein and culture-based analysis of Cyclaneusma minus in New Zealand provides evidence for multiple morphotypes

The paper identifies a third morphotype of Cyclaneusma minus in New Zealand through genomic and effector protein analysis, showing differences in effector family composition and function across morphotypes.

Comparative analysis of the genomic architecture of six Fusarium species

This study compares genomic architectures across six Fusarium species, finding that genomic compartments with low collinearity are enriched for virulence-related genes and show signs of selective pressure.

Segmental Duplications Drive the Evolution of Accessory Regions in a Major Crop Pathogen

This study shows that segmental duplications drive the evolution of accessory regions in Fusarium oxysporum, contributing to virulence evolution in banana pathogens.

Genome-wide characterisation of pathogenicity-related proteins in Mycena citricolor, the causal agent of the American Leaf Spot in coffee

This study identifies pathogenicity-related genes in Mycena citricolor by comparing its genome to saprophytic relatives, finding expanded virulence factor copies and candidate genes involved in plant interaction.

Rapid mini-chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and Zambia

The paper investigates genetic relationships among Magnaporthe oryzae isolates causing wheat blast outbreaks in Bangladesh and Zambia, finding that outbreaks were caused by genetically distinct isolates with divergent mini-chromosomes.

Comparative pangenomic insights into the distinct evolution of virulence factors among grapevine trunk pathogens

The paper analyzes pangenomes of grapevine trunk pathogens to compare the evolution of virulence factors across species.

Recombinase Polymerase Amplification Assay for the Field Detection of Mal Secco Disease by Plenodomus tracheiphilus

This study develops an RPA assay for detecting Plenodomus tracheiphilus in lemon plants, showing comparable sensitivity to PCR and better performance with rapid DNA extraction.

The genome of Salmacisia buchloëana, the parasitic puppetmaster pulling strings of sexual phenotypic monstrosities in buffalograss

This paper sequences and analyzes the genome of Salmacisia buchloëana, a parasitic fungus, identifying unique genomic features and potential mechanisms of host manipulation.

Fungal Pathogen Gene Selection for Predicting the Onset of Infection Using a Multi-Stage Machine Learning Approach

This study uses machine learning to identify genes predicting infection onset in the fungal pathogen Zymoseptoria tritici using transcriptomics data.

Comparative Genomic and Transcriptomic Analysis of Avirulent and Virulent Strains of Fusarium oxysporum f. sp. carthami: Insights into Pathogenesis and Virulence Determinants in Safflower Infections

This study compares the genomes and transcriptomes of virulent and avirulent Fusarium oxysporum f. sp. carthami strains to identify virulence determinants and pathogenicity mechanisms in safflower infections.

Gap-free nuclear and mitochondrial genomes of Fusarium verticillioides strain HN2

The paper presents gap-free nuclear and mitochondrial genomes of Fusarium verticillioides strain HN2, improving genomic resources for studying its pathogenic interactions with maize.

Host-specific subtelomere: structural variation and horizontal transfer in asexual filamentous fungal pathogens

The paper investigates horizontal transfer of supernumerary chromosomes in asexual fungal pathogens and identifies host-specific subtelomere structures involved in telomere maintenance.

Comparative genomics of smut fungi suggest the ability of meiosis and mating in asexual species of the genus Pseudozyma (Ustilaginales)

The paper compares genomic capabilities for mating and meiosis across Pseudozyma and parasitic Ustilaginales species, finding conserved sexual function genes in non-parasitic species.

Botrytis cinerea strains infecting grapevine and tomato display contrasted repertoires of accessory chromosomes, transposons and small RNAs

This study compares genomic features of Botrytis cinerea strains from grapevine and tomato, finding differences in accessory chromosomes, transposons, and small RNAs associated with host specialization.

Population genomics provide insights into the global genetic structure of Colletotrichum graminicola, the causal agent of maize anthracnose

This study uses population genomics to analyze genetic diversity and reproductive biology of Colletotrichum graminicola, revealing global genetic structure and evidence of sexual recombination.

Comparative genomics of five Valsa species gives insights on their pathogenicity evolution

This study compares the genomes of five Valsa species to understand their pathogenicity evolution and drug resistance mechanisms.

Genomic innovation and horizontal gene transfer shaped plant colonization and biomass degradation strategies of a globally prevalent fungal pathogen

This study identifies horizontal gene transfer events in Armillaria fungi that contribute to plant biomass degradation and pathogenicity.

Gap-free nuclear and mitochondrial genomes of Ustilaginoidea virens strain JS60-2, a fungal pathogen causing rice false smut

This study sequenced and assembled gap-free nuclear and complete mitochondrial genomes of Ustilaginoidea virens JS60-2 to aid in understanding its pathogenesis and developing fungicides.

Fusarium oxysporum Effector Clustering version 2 (FoEC2): an updated pipeline to infer host range

FoEC2 is an updated pipeline that classifies Fusarium oxysporum strains into formae speciales by clustering effector sequences from genome assemblies.

In silico assessment of the association of pathogenicity and metal-resistance potential of Fusarium spp.

This study investigates whether pathogenicity determinants in Fusarium species correlate with metal-resistance genes, finding a positive and statistically significant correlation.

A global pangenome for the wheat fungal pathogen Pyrenophora tritici-repentis and prediction of effector protein structural homology

This paper constructs a pangenome for Pyrenophora tritici-repentis and identifies structural homology in effector proteins, revealing genetic variations linked to pathogenicity.