Author

Aster Wardhani

Nanostring Technologies (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Organism:human· 3 Assay:spatial transcriptomics· 3 Research Focus:clustering· 2 Research Focus:database / resource· 2 Assay:proteomics· 2 Approach:statistical model· 2

Frequent Co-Authors

Joseph BeechemiD· 3 shared Lidan WuiD· 3 shared Yan LiangiD· 3 shared Jason ReevesiD· 2 shared Liuliu Pan· 2 shared Mark GregoryiD· 2 shared Michael J. Patrick· 2 shared Patrick J. DanaheriD· 2 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersGenomics

Joseph BeechemORCID

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Author profile →

4 papers

Recent·Most cited

The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs

Jiwoon Park, Roberto De Gregorio, Erika Hissong, Elif Ozcelik, Nicholas Bartelo, Felipe Segato Dezem, Luke Zhang, Maycon Marção, Hannah Chasteen, Yimin Zheng, Ernesto Abila, Junbum Kim, Theodore M. Nelson, Jacqueline Proszynski, Akua A. Agyemang, , Christopher E. Mason

SAHA creates a multimodal, subcellular-resolution reference atlas of healthy human tissues, revealing spatial organization and disease-associated disruptions across multiple organ systems.

bioRxiv · Jun 16, 2025 · PreprintSystems Biology

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

Yered H. Pita-Juárez, Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni Marie Delorey, Adam L. Essene, Olga Rachel Brook, Deepti B. Pant, Disha Skelton-Badlani, Pourya Naderi Yeganeh, Pinzhu Huang, Liuliu Pan, TYLER D. HETHER, Tallulah S. Andrews, , Ioannis S. Vlachos

This study creates a single-nucleus and spatial transcriptomic atlas of the COVID-19 liver, revealing cellular and functional disruptions associated with organ damage.

Genome biology · Mar 14, 2025Peer-reviewedGenomics

MEM-GAN: A Pseudo Membrane Generator for Single-cell Imaging in Fluorescent Microscopy

Yixin Wang, Jiayuan Ding, Lidan Wu, Aster Wardhani, Patrick J. Danaher, Wenzhuo Tang, Hongzhi Wen, Qiaolin Lu, Yi Chang, Yu L. Lei, Jiliang Tang, Yuying Xie

The paper introduces a GAN-based method to generate high-quality membranes for cells with poor staining in fluorescent microscopy images, improving segmentation accuracy.

bioRxiv · Nov 8, 2023 · PreprintBioinformatics

High-plex Multiomic Analysis in FFPE at Subcellular Level by Spatial Molecular Imaging

Shanshan He, Ruchir Bhatt, Carl Brown, Emily A. Brown, Derek L. Buhr, Kan Chantranuvatana, Patrick J. Danaher, Dwayne L. Dunaway, Ryan G. Garrison, Gary K. Geiss, Mark Gregory, Margaret L. Hoang, Rustem Khafizov, Emily E. Killingbeck, Dae Joon Kim, , Joseph Beechem

An automated in-situ imaging platform reads 980 RNAs and 108 proteins in FFPE tissue at subcellular resolution, with 0.0092 false calls per cell; 800,000-plus cells released publicly.

bioRxiv · Nov 3, 2021 · PreprintGenomics