Author

Claudia Catalanotti

10X Genomics (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Assay:whole-genome sequencing· 4 Approach:statistical model· 3 Research Focus:clustering· 2 Research Focus:variant calling· 2 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Shamoni MaheshwariiD· 4 shared Bill K. Lin· 2 shared David A. StaffordiD· 2 shared Ian T. FiddesiD· 2 shared Joe Shuga· 2 shared Jon M. SorensoniD· 2 shared Kamila Belhocine· 2 shared Michael Schnall-Levin· 2 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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4 shared papersGenomics

Shamoni MaheshwariORCID

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4 papers

Recent·Most cited

Establishing reference samples for detection of somatic mutations and germline variants with NGS technologies

Li Tai Fang, Bin Zhu, Yongmei Zhao, Wanqiu Chen, Zhaowei Yang, Liz Kerrigan, Kurt J. Langenbach, Maryellen de Mars, Charles Lu, Kenneth B. Idler, Howard J. Jacob, Yuanting Zheng, Luyao Ren, Ying Yu, Erich B. Jaeger, , Paul G. Giresi

The paper establishes reference samples with high-coverage whole-genome sequencing to create truth sets for somatic mutation and germline variant detection using NGS technologies.

Nature Biotechnology · Sep 1, 2021Peer-reviewedBioinformatics

Joint single cell DNA-Seq and RNA-Seq of gastric cancer reveals subclonal signatures of genomic instability and gene expression

Noemi Andor, Billy T. Lau, Claudia Catalanotti, Vijay Kumar, Anuja Sathe, Kamila Belhocine, Tobias D. Wheeler, Andrew D. Price, Maengseok Song, Željko Džakula, Jon M. Sorenson, David A. Stafford, Zachary Bent, Laura E. DeMare, Lance Hepler, , Hanlee P. Ji

The paper combines single cell DNA-Seq and RNA-Seq in gastric cancer to reveal subclonal genomic instability and gene expression patterns, showing evidence of tumor evolution.

bioRxiv · Jun 21, 2020 · PreprintGenomics

Resolving sub-clonal heterogeneity within cell-line growths by single cell sequencing genomic DNA

Enrique I. Velazquez-Villarreal, Shamoni Maheshwari, Jon M. Sorenson, Ian T. Fiddes, Vijay Kumar, Yifeng Yin, Michelle G. Webb, Claudia Catalanotti, Mira Grigorova, Paul A. Edwards, John David Carpten, David Wesley Craig

The paper uses single-cell sequencing of genomic DNA to resolve sub-clonal heterogeneity in the COLO829 cell line, identifying four major sub-clones and explaining conflicting bulk sequencing results.

bioRxiv · Sep 5, 2019 · PreprintGenomics

Resolving the Full Spectrum of Human Genome Variation using Linked-Reads

Patrick Marks, Sarah Garcia, Álvaro Martínez Barrio, Kamila Belhocine, Jorge Bernate, Rajiv Bharadwaj, Keith P. Bjornson, Claudia Catalanotti, Josh Delaney, Adrian N. Fehr, Ian T. Fiddes, Brendan D. Galvin, Haynes Heaton, Jill Herschleb, Christopher M. Hindson, , Deanna M. Church

This paper introduces Linked-Reads as a method to comprehensively analyze genome variation, showing it can detect both small and large variants and reconstruct haplotypes more effectively than short-read sequencing.

Genome Research · Apr 1, 2019Peer-reviewedGenomics