Author

D. K. Allen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 6 Biochemistry· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 8 Research Focus:metabolism & bioenergetics· 5 Assay:metabolomics· 5 Organism:plant (other)· 5 Assay:bulk RNA-seq· 3 Research Focus:cell type annotation· 3 Assay:proteomics· 3 Organism:Arabidopsis· 1

Frequent Co-Authors

J. J. Arp· 3 shared K. Chu· 3 shared L. M. Jenkins· 3 shared P. D. Bates· 3 shared S. Kambhampati· 3 shared S. Koley· 3 shared S. R. Bailey· 2 shared A. Cazenave-Gassiot· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersPlant Biology

J. J. Arp

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Author profile →

8 papers

Recent·Most cited

Triacylglycerol stability limits futile cycles and inhibition of carbon capture in oil-accumulating tobacco leaves

B. S. Johnson, D. K. Allen, P. D. Bates

This study shows that unstable triacylglycerol (TAG) production and futile cycles limit oil accumulation in engineered tobacco leaves, but the LEC2 line overcomes these issues by stabilizing TAG and restoring CO2 assimilation.

bioRxiv · Sep 12, 2023Plant Biology

Comparative omics reveals unanticipated metabolic rearrangements in a high-oil mutant of plastid acetyl-CoA carboxylase

A. Kataya, J. R. da Silva Nascimento, C. Xu, M. G. Garneau, S. Koley, A. N. Kimberlin, B. P. Mooney, D. K. Allen, P. D. Bates, A. J. Koo, D. Xu, J. J. Thelen

The paper investigates metabolic changes in an Arabidopsis mutant with altered ACCase activity, revealing shifts in carbon flux and protein accumulation.

bioRxiv · Aug 31, 2023Plant Biology

Depleting cationic lipids involved in antimicrobial resistance drives adaptive lipid remodeling in Enterococcus faecalis

R. Rashid, Z. J. Nair, D. M. H. Chia, K. K. L. Chong, A. Cazenave-Gassiot, S. A. Morley, D. K. Allen, S. L. Chen, S.-S. Chng, M. R. Wenk, K. A. Kline

This study shows that depleting cationic lipids in Enterococcus faecalis leads to adaptive lipid remodeling, including reduced PG, increased phosphorus-containing lipids, and altered fatty acid metabolism.

bioRxiv · Nov 4, 2022 · PreprintMicrobiology

Developmental Effects on Relative Use of PEPCK and NADP-ME Pathways of C4 Photosynthesis in Maize

J. J. Arp, S. Kambhampati, K. Chu, S. Koley, L. M. Jenkins, T. C. Mockler, D. K. Allen

This study examines how the proportion of two C4 pathways in maize depends on canopy position rather than leaf age.

bioRxiv · Jun 25, 2021 · PreprintPlant Biology

Temporal changes in metabolism late in seed development affect biomass composition in soybean

S. Kambhampati, J. A. Aznar-Moreno, S. R. Bailey, J. J. Arp, K. Chu, K. D. Bilyeu, T. P. Durrett, D. K. Allen

The study assesses temporal changes in metabolism during soybean seed development, showing lipid turnover contributes carbon for gluconeogenic carbohydrate production during maturation.

bioRxiv · Oct 15, 2020Plant Biology

Shifting carbon flux from non-transient starch to lipid allows oil accumulation in transgenic tobacco leaves

K. Chu, L. M. Jenkins, S. R. Bailey, S. Kambhampati, S. Koley, K. Foley, J. J. Arp, K. J. Czymmek, P. D. Bates, D. K. Allen

This study shows that redirecting carbon from non-transient starch to lipid in tobacco leaves enables high oil accumulation through developmental source-sink plasticity.

bioRxiv · May 15, 2020Plant Biology

Quantification and Discovery of Acyl-ACPs by LC-MS/MS

J.-W. Nam, L. M. Jenkins, J. Li, B. Evans, J. G. Jaworski, D. K. Allen

The paper develops a method to quantify acyl-ACPs at picogram levels and identifies new intermediates and acyl-ACPs, highlighting gaps in lipid metabolism understanding.

bioRxiv · Dec 10, 2019Biochemistry

Sterile spikelets assimilate carbon in sorghum and related grasses

T. AuBuchon-Elder, V. Coneva, D. M. Goad, D. K. Allen, E. A. Kellogg.

The paper shows that sterile spikelets in sorghum and related grasses assimilate carbon, supporting the seed-bearing spikelet, while the awn does not perform photosynthesis.

bioRxiv · Jan 5, 2019Plant Biology