Author

Dimitris Nicoloutsopoulos

UCL Queen Square Institute of Neurology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Neuroscience· 4

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Research Focus:cell type annotation· 4 Organism:mouse· 4 Approach:statistical model· 3 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Kenneth D. HarrisiD· 4 shared Anne RitouxiD· 2 shared David OrmeiD· 2 shared Isabelle PrankerdiD· 2 shared Joshua A. M. DuffieldiD· 2 shared Maxwell ShinniD· 2 shared Stéphane BugeoniD· 2 shared Yoh IsogaiiD· 2 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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4 shared papersNeuroscience

Kenneth D. HarrisORCID

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4 papers

Recent·Most cited

Spatially resolved transcriptomic identification of thousands of neurons recorded in vivo.

Isabelle Prankerd, Maxwell Shinn, Paul C. Shuker, Zhiyao Zhou, Reilly Tilbury, Joshua A. M. Duffield, Christina A. Maat, Dimitris Nicoloutsopoulos, Anne Ritoux, Paula Maglio Cauhy, David Orme, Mathieu Bourdenx, Karen Duff, Stéphane Bugeon, Yoh Isogai, Kenneth D Harris

This paper introduces coppaFISH 3D and CASTalign to enable transcriptomic identification of thousands of in vivo recorded neurons at scale.

bioRxiv · May 16, 2026 · PreprintNeuroscience

A spatially-resolved transcriptional atlas of the murine dorsal pons at single-cell resolution

Stefano Nardone, Roberto De Luca, Antonino Zito, Nataliya Klymko, Dimitris Nicoloutsopoulos, Oren Amsalem, Cory Brannigan, Jon M. Resch, Christopher L. Jacobs, Deepti B. Pant, Molly L. Veregge, Harini Srinivasan, Ryan M. Grippo, Zongfang Yang, Mark L. Zeidel, , Bradford B. Lowell

This study creates a spatially-resolved transcriptional atlas of the murine dorsal pons using snRNA-seq and MERFISH, identifying 120 neuronal subtypes and their spatial distribution.

Nature Communications · Mar 4, 2024Peer-reviewedNeuroscience

A transcriptomic axis predicts state modulation of cortical interneurons

Stéphane Bugeon, Joshua A. M. Duffield, Mario Dipoppa, Anne Ritoux, Isabelle Prankerd, Dimitris Nicoloutsopoulos, David Orme, Maxwell Shinn, Han Peng, Hamish Forrest, Aiste Viduolyte, Charu Bai Reddy, Yoh Isogai, Matteo Carandini, Kenneth D. Harris

The paper identifies a transcriptomic axis that predicts how cortical interneurons modulate activity across brain states.

Nature · Jul 6, 2022Peer-reviewedNeuroscience

A spatial atlas of inhibitory cell types in mouse hippocampus

Xiaoyan Qian, Kenneth D. Harris, Thomas Hauling, Dimitris Nicoloutsopoulos, Ana B. Muñoz‐Manchado, Nathan Skene, Jens Hjerling‐Leffler, Mats F. Nilsson

The paper introduces pciSeq to map inhibitory neurons in mouse hippocampus CA1, identifying 16 interneuron classes with spatial arrangement matching ground truth.

Nature Methods · Nov 18, 2019Peer-reviewedNeuroscience