J. F. Petrosino

This study analyzes phage and bacterial dynamics in early human life using longitudinal data from the TEDDY study, revealing individual-specific phage communities and ecological patterns correlated with bacterial hosts.

The paper investigates E. coli strains from cancer patients with diarrhea, finding novel adherence patterns and high antibiotic resistance gene carriage.

The paper studies intra- and inter-host evolution of human norovirus in healthy adults using a capture-based sequencing approach, finding limited conserved immune pressure-driven evolution.

The paper compares RSV infection in HEp-2 and A549 cells using four strains, finding subgroup-dependent gene expression differences and A549's greater antiviral response.

This study develops an oligonucleotide capture sequencing method to generate SARS-CoV-2 genomic and transcriptome sequences from clinical samples, revealing differential transcriptional activity and ORF10 expression.

The paper identifies high sequence similarity in the RBM of nCoV-2019 with a pangolin coronavirus, suggesting a possible recombination event involving pangolins in its origin.

This paper introduces a co-culture system to study host-microbe interactions under physiological hypoxia using human intestinal enteroids and anaerobic bacteria.