Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
8 papers
Recent·Most cited
H. Carter, J. Clark, L. G. Carlin, E. Vaughan, A. Rajan, A. Olvera, X. Yu, X.-L. Zeng, A. Kambal, M. Holder, X. Qin, R. A. Gibbs, J. F. Petrosino, D. M. Muzny, H. Doddapaneni, , P. C. Okhuysen
The paper investigates E. coli strains from cancer patients with diarrhea, finding novel adherence patterns and high antibiotic resistance gene carriage.
bioRxiv · May 31, 2023 · PreprintMicrobiology
S. Ramani, S. J. Javornik Cregeen, A. Surathu, F. H. Neill, D. M. Muzny, H. Doddapaneni, V. K. Menon, K. L. Hoffman, M. C. Ross, G. Metcalf, A. R. Opekun, D. Y. Graham, R. A. Gibbs, J. F. Petrosino, M. K. Estes, R. L. Atmar
The paper studies intra- and inter-host evolution of human norovirus in healthy adults using a capture-based sequencing approach, finding limited conserved immune pressure-driven evolution.
bioRxiv · May 30, 2023 · PreprintMicrobiology
V. Avadhanula, C. J. Creighton, L. Ferlic-Stark, R. Sucgang, Y. Zhang, D. Nagaraj, E. G. Nicholson, A. Rajan, V. K. Menon, H. Doddapaneni, D. M. Muzny, G. A. Metcalf, S. J. J. Cregeen, K. L. Hoffman, R. A. Gibbs, , P. A. Piedra
The paper examines longitudinal transcriptional responses to SARS-CoV-2 infection in adults with varying viral loads, identifying gene expression patterns and host responses over time.
bioRxiv · May 24, 2023Microbiology
H. V. Doddapaneni, S. J. Cregeen, R. Sucgang, Q. Meng, X. Qing, V. Avadhanula, H. Chao, V. Menon, E. Nicholson, D. Henke, F.-A. Piedra, A. Rajan, Z. Momin, K. Kottapalli, K. L. Hoffman, , R. A. Gibbs
This study develops an oligonucleotide capture sequencing method to generate SARS-CoV-2 genomic and transcriptome sequences from clinical samples, revealing differential transcriptional activity and ORF10 expression.
bioRxiv · Jul 27, 2020 · PreprintMicrobiology
D. Vanderpool, B. Q. Minh, R. Lanfear, D. Hughes, S. Murali, R. A. Harris, M. Raveendran, D. M. Muzny, R. A. Gibbs, K. C. Worley, J. Rogers, M. W. Hahn
This study uses genome-wide data to resolve primate phylogenetic relationships, identifying multiple radiations and ancient introgression events.
bioRxiv · Apr 15, 2020Evolutionary Biology
E. Mace, S. Paust, M. I. Conte, R. M. Baxley, M. Schmit, N. C. Guilz, M. Mukherjee, A. E. Pezzi, J. Chmielowiec, S. Tatineni, I. K. Chinn, Z. C. Akdemir, S. N. Jhangiani, D. M. Muzny, A. Stray-Pedersen, , J. Orange
This study identifies biallelic MCM10 mutations as a cause of human NK cell deficiency, showing impaired NK cell maturation and function in a patient with CMV susceptibility.
bioRxiv · Nov 7, 2019Immunology
W. A. Comrie, M. C. Poli, S. A. Cook, M. Similuk, A. Oler, A. J. Faruqi, D. B. Kuhns, S. Yang, A. F. Carisey, B. Fournier, D. E. Anderson, S. Price, W. A. Chahla, A. Vargas-Hernandez, L. R. Forbes, , M. J. Lenardo
Hem1 loss-of-function mutations cause congenital immunodysregulation by disrupting WAVE2 and mTORC2 complexes, leading to immunodeficiency and immune hyperresponsiveness.
bioRxiv · Jul 4, 2019 · PreprintImmunology
M. C. Harrison, E. Jongepier, H. M. Robertson, N. Arning, T. Bitard-Feildel, H. Chao, C. P. Childers, H. Dinh, H. Doddapaneni, S. Dugan, J. Gowin, C. Greiner, Y. Han, H. Hu, D. S. T. Hughes, , E. Bornberg-Bauer
The paper compares genomes and transcriptomes of termites and cockroaches to identify molecular mechanisms underlying termite eusociality, finding parallels and differences with Hymenoptera.
bioRxiv · Nov 15, 2017Evolutionary Biology