Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
10 papers
Recent·Most cited
C. L. Chappell, K. L. Hoffman, P. L. Lorenzi, L. Tan, J. Petrosino, R. Gibbs, D. Muzny, H. Doddapaneni, M. C. Ross, V. K. Menon, A. Surathu, S. J. Javornik Cregeen, A. G. Reyes, P. C. Okhuysen
The paper measures tryptophan metabolites in fecal samples from healthy individuals and links them to bacterial abundance and predicted microbial sources.
bioRxiv · Dec 20, 2023 · PreprintMicrobiology
H. Carter, J. Clark, L. G. Carlin, E. Vaughan, A. Rajan, A. Olvera, X. Yu, X.-L. Zeng, A. Kambal, M. Holder, X. Qin, R. A. Gibbs, J. F. Petrosino, D. M. Muzny, H. Doddapaneni, , P. C. Okhuysen
The paper investigates E. coli strains from cancer patients with diarrhea, finding novel adherence patterns and high antibiotic resistance gene carriage.
bioRxiv · May 31, 2023 · PreprintMicrobiology
S. Ramani, S. J. Javornik Cregeen, A. Surathu, F. H. Neill, D. M. Muzny, H. Doddapaneni, V. K. Menon, K. L. Hoffman, M. C. Ross, G. Metcalf, A. R. Opekun, D. Y. Graham, R. A. Gibbs, J. F. Petrosino, M. K. Estes, R. L. Atmar
The paper studies intra- and inter-host evolution of human norovirus in healthy adults using a capture-based sequencing approach, finding limited conserved immune pressure-driven evolution.
bioRxiv · May 30, 2023 · PreprintMicrobiology
V. Avadhanula, C. J. Creighton, L. Ferlic-Stark, R. Sucgang, Y. Zhang, D. Nagaraj, E. G. Nicholson, A. Rajan, V. K. Menon, H. Doddapaneni, D. M. Muzny, G. A. Metcalf, S. J. J. Cregeen, K. L. Hoffman, R. A. Gibbs, , P. A. Piedra
The paper examines longitudinal transcriptional responses to SARS-CoV-2 infection in adults with varying viral loads, identifying gene expression patterns and host responses over time.
bioRxiv · May 24, 2023Microbiology
E. F. Sorensen, R. A. Harris, L. Zhang, M. Raveendran, L. F. K. Kuderna, J. A. Walker, J. M. Storer, M. Kuhlwilm, C. Fontsere, L. Seshadri, C. M. Bergey, A. S. Burrell, J. Bergmann, J. E. Phillips-Conroy, F. Shiferaw, , J. Rogers
Genomic data from 225 baboons reveal novel inter-species gene flow sites and local admixture effects across different lineages.
bioRxiv · May 2, 2023Evolutionary Biology
A. Rajan, F.-A. Piedra, L. Aideyan, T. McBride, M. J. Robertson, H. L. Johnson, G. M. Aloisio, D. M. Henke, C. Coarfa, F. Stossi, V. K. Menon, H. Doddapaneni, D. Muzny, S. J. Javornik Cregeen, K. L. Hoffman, , P. A. Piedra
The paper compares RSV infection in HEp-2 and A549 cells using four strains, finding subgroup-dependent gene expression differences and A549's greater antiviral response.
bioRxiv · Jun 15, 2021 · PreprintMicrobiology
R. J. Wang, G. W. C. Thomas, M. Raveendran, A. R. Harris, H. Doddapaneni, D. M. Muzny, J. P. Capitanio, P. Radivojac, J. Rogers, M. W. Hahn
This study estimates the de novo mutation rate in rhesus macaques and finds it is lower than in humans, but paternal age still correlates with increased mutations. No association is found between paternal age and offspring sociability.
bioRxiv · Nov 26, 2019Evolutionary Biology
A. J. Patel, Y.-W. Wan, R. Al-Ouran, J.-P. Revelli, M. F. Cardenas, M. Oneissi, L. Xi, A. Jalali, J. Magnotti, D. M. Muzny, H. Doddapaneni, S. Sebastian, K. A. Heck, J. C. Goodman, S. P. Gopinath, , T. J. Klisch
This study identifies three molecular types of meningiomas that better predict recurrence than WHO grading and links aggressive tumors to loss of DREAM complex repression.
bioRxiv · Sep 10, 2019Cancer Biology
G. W. C. Thomas, R. J. Wang, A. Puri, R. A. Harris, M. Raveendran, D. Hughes, S. Murali, L. Williams, H. Doddapaneni, D. Muzny, R. Gibbs, C. Abee, M. R. Galinski, K. C. Worley, J. Rogers, , M. W. Hahn
The paper shows that paternal age determines de novo mutation rates in owl monkeys and proposes a model linking reproductive longevity to mutation rates across primates.
bioRxiv · May 21, 2018Evolutionary Biology
M. C. Harrison, E. Jongepier, H. M. Robertson, N. Arning, T. Bitard-Feildel, H. Chao, C. P. Childers, H. Dinh, H. Doddapaneni, S. Dugan, J. Gowin, C. Greiner, Y. Han, H. Hu, D. S. T. Hughes, , E. Bornberg-Bauer
The paper compares genomes and transcriptomes of termites and cockroaches to identify molecular mechanisms underlying termite eusociality, finding parallels and differences with Hymenoptera.
bioRxiv · Nov 15, 2017Evolutionary Biology