Author

K. D. Allen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 2 Animal Behavior & Cognition· 1 Biochemistry· 1 Biophysics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:host-pathogen & immune response· 3 Organism:bacteria (other)· 2 Research Focus:protein folding & dynamics· 2 Assay:proteomics· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1

Frequent Co-Authors

B. D. Partain· 2 shared B. G. Keselowsky· 2 shared E. Bracho-Sanchez· 2 shared G. A. Hudalla· 2 shared S. A. Farhadi· 2 shared A. Ghosh· 1 shared A. J. Kwiatkowski· 1 shared A. Pedraza· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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2 shared papersBioengineering

B. D. Partain

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Structural dynamics of the methyl-coenzyme M reductase active site are influenced by coenzyme F430 modifications

M. D. Poleto, K. D. Allen, J. A. Lemkul

This study uses molecular dynamics simulations to analyze how coenzyme F430 modifications affect the structural dynamics and electric fields of methyl-coenzyme M reductase (MCR) active sites.

bioRxiv · Jan 7, 2024 · PreprintBiophysics

Control of Biofilm Formation by an Agrobacterium tumefaciens Pterin-Binding Periplasmic Protein Conserved Among Pathogenic Bacteria

J. Greenwich, J. L. Eagan, N. Feirer, K. Boswinkle, G. A. Minasov, L. Shuvaloca, N. L. Inniss, J. Raghavaiah, A. Ghosh, K. J. F. Satchell, K. D. Allen, C. Fuqua

This paper identifies a pterin-responsive regulatory mechanism in Agrobacterium tumefaciens that controls biofilm formation through interactions between PruR, DcpA, and pterins.

bioRxiv · Nov 18, 2023 · PreprintMicrobiology

Technical Note: DeepLabCut-Display: open-source desktop application for visualizing and analyzing two-dimensional gait parameter data in livestock

J. Shirey, M. Smythe, S. Dewberry, K. D. Allen, E. Jain, S. A. Brooks

DeepLabCut-Display is a software tool that visualizes and analyzes gait data from livestock using DeepLabCut outputs, enabling automated gait parameter calculation and post-processing.

bioRxiv · Oct 30, 2023 · PreprintAnimal Behavior & Cognition

CADD from Chlamydia trachomatis is a manganese-dependent oxygenase that employs a self-sacrificing mechanism for the synthesis of p-aminobenzoate

R. Wooldridge, S. stone, A. Pedraza, W. K. Ray, R. F. Helm, K. D. Allen

This study characterizes CADD from Chlamydia trachomatis as a manganese-dependent oxygenase using self-sacrificing tyrosine and lysine residues for p-aminobenzoate synthesis.

bioRxiv · Aug 1, 2022 · PreprintBiochemistry

Intra-Articular Delivery of an Indoleamine 2,3-Dioxygenase Galectin-3 Fusion Protein for Osteoarthritis Treatment in Male Lewis Rats

B. D. Partain, E. Bracho-Sanchez, S. A. Farhadi, E. G. Yarmola, B. G. Keselowsky, G. A. Hudalla, K. D. Allen

This study evaluates an IDO-Gal3 fusion protein for treating osteoarthritis in rats, showing reduced inflammation and improved pain behaviors.

bioRxiv · Jul 21, 2021Bioengineering

Galectin-anchored indoleamine 2,3-dioxygenase suppresses local inflammation

E. Bracho-Sanchez, F. Rocha, S. K. Bedingfield, B. D. Partain, M. A. Brusko, J. M. Colazo, M. M. Fettis, S. A. Farhadi, E. Y. Helm, K. Koenders, A. J. Kwiatkowski, S. L. Macias, A. Restuccia, A. Wanchoo, D. Avram, , B. G. Keselowsky

This paper develops a fusion protein IDO-Gal3 that anchors immunosuppressive enzymes to tissues, effectively suppressing local inflammation in multiple disease models.

bioRxiv · May 7, 2021 · PreprintBioengineering