Author

Kelly Wong

Harold C. Simmons Comprehensive Cancer Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:imaging· 1

Frequent Co-Authors

Hao ZhuiD· 2 shared Alejandro ChaveziD· 1 shared Andrea CalifanoiD· 1 shared Beatrice Salvatori· 1 shared Bo-Jui ChangiD· 1 shared Changwei LiiD· 1 shared Claire LeeiD· 1 shared Ester Calvo FernándeziD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersCancer Biology

Hao ZhuORCID

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Author profile →

3 papers

Recent·Most cited

Deciphering the Multiscale Morphology of Somatic Oncogenic Alterations in Hepatocellular Carcinoma

Qionghua Shen, Tai Ngo, Hanieh Mazloom-Farsibaf, Kelly Wong, Lin Li, Kushal Bhatt, Felix Zhou, Bo-Jui Chang, Xiaoding Wang, Zhiguo Shang, John Haug, Hazel M. Borges, Reto Paul Fiolka, Hao Zhu, Kevin M. Dean

This study maps how distinct oncogenic drivers induce unique multiscale architectural changes in liver tissue, revealing mutation-specific remodeling across cellular and mitochondrial structures.

bioRxiv · Jul 16, 2026 · PreprintCancer Biology

An Interpretable Multi-instance Learner Decodes Cellular Recruitment from Spatially Resolved Transcriptomics

Jia Yao, Ji Seon Shim, Kelly Wong, James J. Zhu, Yunhe Liu, Sung Wook Kang, Kelli Bryan M. Burt, Jong Min Choi, Claire Lee, Idania Carolina Lubo Julio, Luisa Maren Solis Soto, Sharia Hernandez, Karen Colbert, Wei Lü, Khaja Khan, , Tao Wang

This study introduces a deep learning model called spacer to analyze spatially resolved transcriptomics data, revealing novel insights into cellular recruitment mechanisms in tumors and heart tissue during myocarditis.

bioRxiv · Nov 20, 2025 · PreprintBioinformatics

Interrogation of genome-wide, experimentally dissected gene regulatory networks reveals mechanisms underlying dynamic cellular state control

Xiangtian Tan, Jeremy Worley, Mikko M. Turunen, Kelly Wong, Ester Calvo Fernández, Evan Paull, Sunny J. Jones, Junqiang Wang, Heeju Noh, Beatrice Salvatori, Alejandro Chavez, Andrea Califano

The paper uses CRISPRi and single-cell RNA-seq to reverse engineer gene regulatory networks in colorectal cancer cells, revealing autoregulatory and cooperative mechanisms.

bioRxiv · Jun 28, 2021 · PreprintSystems Biology