Author

Jong Min Choi

Baylor College of MedicineORCID 0000-0002-5282-7697Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Molecular Biology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Organism:C. elegans· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell-cell communication· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Sung Yun JungiD· 2 shared Alexander B. SaltzmaniD· 1 shared Amber Christenson· 1 shared Ana Paula ArrudaiD· 1 shared Andrew GrimsoniD· 1 shared Anna MalovannayaiD· 1 shared Antrix JainiD· 1 shared Ayse Sena MutluiD· 1 shared

Activity by Year

2019-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersPhysiology

Sung Yun JungORCID

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Author profile →

4 papers

Recent·Most cited

Comparative proteomic quantification reveals novel longevity regulators

Lang Ding, Hanfeng Lin, Cuizhen Huang, Viruthika Vallanadu, Kelly Ashley, Scarlett Rose Pitts, Ayse Sena Mutlu, Yue Zhou, Xing Ma, Jong Min Choi, Feng Jin, Jin Wang, Meng Carla Wang

The paper compares five quantitative proteomic methods to identify high-confidence longevity regulators in C. elegans by analyzing IIS mutants.

bioRxiv · Oct 7, 2026 · PreprintMolecular Biology

An Interpretable Multi-instance Learner Decodes Cellular Recruitment from Spatially Resolved Transcriptomics

Jia Yao, Ji Seon Shim, Kelly Wong, James J. Zhu, Yunhe Liu, Sung Wook Kang, Kelli Bryan M. Burt, Jong Min Choi, Claire Lee, Idania Carolina Lubo Julio, Luisa Maren Solis Soto, Sharia Hernandez, Karen Colbert, Wei Lü, Khaja Khan, , Tao Wang

This study introduces a deep learning model called spacer to analyze spatially resolved transcriptomics data, revealing novel insights into cellular recruitment mechanisms in tumors and heart tissue during myocarditis.

bioRxiv · Nov 20, 2025 · PreprintBioinformatics

Nutrient-Sensing Nuclear Receptor PPARα Controls Liver Proteostasis

Jinse Kim, Noor Bains, Kaylin G. Maddox, Julia G. Hwang, Jackson Q. Margolis, Jinyu Jiang, Francesca Fantini, Sung Yun Jung, Jong Min Choi, Naveed Ziari, Hussein Mohammed, Marc K. Hellerstein, Ana Paula Arruda, Sungwoo Choi, Kang Ho Kim, David D. Moore

This study identifies PPARα as a regulator of liver proteostasis, showing it suppresses protein synthesis and secretion while enhancing proteasome activity and degradation.

bioRxiv · Sep 1, 2025 · PreprintPhysiology

MiR-146a wild-type 3’ sequence identity is dispensable for proper innate immune function in vivo

Grant Bertolet, Natee Kongchan, Rebekah Miller, Ravi K. Patel, Antrix Jain, Jong Min Choi, Alexander B. Saltzman, Amber Christenson, Sung Yun Jung, Anna Malovannaya, Andrew Grimson, Joel R. Neilson

This study shows that 3' sequence identity is not required for the established function of miR-146a in myeloid cells in vivo.

Life Science Alliance · Feb 1, 2019Peer-reviewedGenetics