M. Barnes

Development of resident and migratory three-spined stickleback, Gasterosteus aculeatus.

This study describes the development of two sympatric saltwater stickleback ecotypes at 14°C, finding migratory eggs hatch earlier than resident ones, providing a reference for developmental features in this environment.

Topography of mutational signatures in human cancer

This paper analyzes how mutational signatures in cancer genomes are influenced by genomic topography using integrated data from 5,120 tumors and ENCODE features.

TCGADEPMAP -- Mapping Translational Dependencies and Synthetic Lethalities within The Cancer Genome Atlas

TCGADEPMAP maps translational tumor dependencies and synthetic lethality using TCGA data, identifying novel targets like PAPSS1/2 with clinical implications.

Global hypo-methylation in a subgroup of glioblastoma enriched for an astrocytic signature is associated with increased invasion and altered immune landscape

The paper identifies a glioblastoma subgroup with global hypo-methylation and astrocytic features linked to invasion and immune changes.

INfrastructure for a PHAge REference Database: Identification of large-scale biases in the current collection of phage genomes

The paper develops a tool to extract phage genomes and identifies biases in their representation, such as overrepresentation of lytic phages and limited host diversity.

Continent-scale phenotype mapping using photographs from citizen scientists

This paper develops a method to quantify phenotypes from citizen scientists' photographs and applies it to study geographical and temporal variation in two damselfly species.